Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02110

Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_02109 and H281DRAFT_02110 are separated by 87 nucleotidesH281DRAFT_02110 and H281DRAFT_02111 are separated by 123 nucleotides H281DRAFT_02109: H281DRAFT_02109 - nitronate monooxygenase, at 234,177 to 235,136 _02109 H281DRAFT_02110: H281DRAFT_02110 - methylmalonyl-CoA mutase, at 235,224 to 238,622 _02110 H281DRAFT_02111: H281DRAFT_02111 - transcriptional regulator, LysR family, at 238,746 to 239,681 _02111 Position (kb) 235 236 237 238 239Strain fitness (log2 ratio) -2 -1 0 1 2at 234.371 kb on + strand, within H281DRAFT_02109at 234.371 kb on + strand, within H281DRAFT_02109at 234.371 kb on + strand, within H281DRAFT_02109at 234.372 kb on - strand, within H281DRAFT_02109at 234.544 kb on - strand, within H281DRAFT_02109at 234.659 kb on + strand, within H281DRAFT_02109at 234.659 kb on + strand, within H281DRAFT_02109at 234.660 kb on - strand, within H281DRAFT_02109at 234.783 kb on + strand, within H281DRAFT_02109at 234.783 kb on + strand, within H281DRAFT_02109at 234.783 kb on + strand, within H281DRAFT_02109at 234.783 kb on + strand, within H281DRAFT_02109at 234.783 kb on + strand, within H281DRAFT_02109at 234.783 kb on + strand, within H281DRAFT_02109at 234.784 kb on - strand, within H281DRAFT_02109at 234.784 kb on - strand, within H281DRAFT_02109at 234.784 kb on - strand, within H281DRAFT_02109at 234.784 kb on - strand, within H281DRAFT_02109at 234.835 kb on - strand, within H281DRAFT_02109at 234.835 kb on - strand, within H281DRAFT_02109at 234.835 kb on - strand, within H281DRAFT_02109at 234.876 kb on + strand, within H281DRAFT_02109at 234.877 kb on - strand, within H281DRAFT_02109at 234.877 kb on - strand, within H281DRAFT_02109at 234.910 kb on - strand, within H281DRAFT_02109at 235.226 kb on - strandat 235.226 kb on - strandat 235.226 kb on - strandat 235.229 kb on + strandat 235.229 kb on + strandat 235.229 kb on + strandat 235.230 kb on - strandat 235.230 kb on - strandat 235.240 kb on + strandat 235.241 kb on - strandat 235.413 kb on + strandat 235.414 kb on - strandat 235.831 kb on + strand, within H281DRAFT_02110at 235.831 kb on + strand, within H281DRAFT_02110at 235.898 kb on + strand, within H281DRAFT_02110at 235.899 kb on - strand, within H281DRAFT_02110at 235.899 kb on - strand, within H281DRAFT_02110at 235.921 kb on + strand, within H281DRAFT_02110at 236.011 kb on + strand, within H281DRAFT_02110at 236.012 kb on - strand, within H281DRAFT_02110at 236.089 kb on + strand, within H281DRAFT_02110at 236.089 kb on + strand, within H281DRAFT_02110at 236.089 kb on + strand, within H281DRAFT_02110at 236.089 kb on + strand, within H281DRAFT_02110at 236.090 kb on - strand, within H281DRAFT_02110at 236.102 kb on - strand, within H281DRAFT_02110at 236.191 kb on + strandat 236.221 kb on + strand, within H281DRAFT_02110at 236.222 kb on - strand, within H281DRAFT_02110at 236.222 kb on - strand, within H281DRAFT_02110at 236.516 kb on - strand, within H281DRAFT_02110at 236.576 kb on - strand, within H281DRAFT_02110at 236.576 kb on - strand, within H281DRAFT_02110at 236.609 kb on - strand, within H281DRAFT_02110at 236.835 kb on - strand, within H281DRAFT_02110at 236.862 kb on - strand, within H281DRAFT_02110at 236.895 kb on + strand, within H281DRAFT_02110at 236.896 kb on - strand, within H281DRAFT_02110at 236.938 kb on + strand, within H281DRAFT_02110at 237.148 kb on + strand, within H281DRAFT_02110at 237.181 kb on + strand, within H281DRAFT_02110at 237.181 kb on + strand, within H281DRAFT_02110at 237.302 kb on - strand, within H281DRAFT_02110at 237.302 kb on - strand, within H281DRAFT_02110at 237.308 kb on - strand, within H281DRAFT_02110at 237.541 kb on + strand, within H281DRAFT_02110at 237.542 kb on - strand, within H281DRAFT_02110at 237.542 kb on - strand, within H281DRAFT_02110at 237.542 kb on - strand, within H281DRAFT_02110at 237.542 kb on - strand, within H281DRAFT_02110at 237.706 kb on + strand, within H281DRAFT_02110at 237.707 kb on - strand, within H281DRAFT_02110at 237.707 kb on - strand, within H281DRAFT_02110at 237.867 kb on - strand, within H281DRAFT_02110at 237.932 kb on + strand, within H281DRAFT_02110at 237.932 kb on + strand, within H281DRAFT_02110at 237.933 kb on - strand, within H281DRAFT_02110at 237.967 kb on - strand, within H281DRAFT_02110at 238.252 kb on + strand, within H281DRAFT_02110at 238.252 kb on + strand, within H281DRAFT_02110at 238.363 kb on + strandat 238.384 kb on + strandat 238.461 kb on + strandat 238.461 kb on + strandat 238.462 kb on - strandat 238.673 kb on + strandat 238.675 kb on + strandat 238.747 kb on + strandat 238.748 kb on - strandat 238.748 kb on - strandat 238.748 kb on - strandat 239.102 kb on - strand, within H281DRAFT_02111at 239.102 kb on - strand, within H281DRAFT_02111at 239.164 kb on + strand, within H281DRAFT_02111at 239.329 kb on + strand, within H281DRAFT_02111at 239.485 kb on + strand, within H281DRAFT_02111at 239.489 kb on - strand, within H281DRAFT_02111at 239.489 kb on - strand, within H281DRAFT_02111

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM
remove
234,371 + H281DRAFT_02109 0.20 -1.7
234,371 + H281DRAFT_02109 0.20 +0.2
234,371 + H281DRAFT_02109 0.20 +0.3
234,372 - H281DRAFT_02109 0.20 +1.0
234,544 - H281DRAFT_02109 0.38 -0.5
234,659 + H281DRAFT_02109 0.50 -0.4
234,659 + H281DRAFT_02109 0.50 -0.8
234,660 - H281DRAFT_02109 0.50 -0.3
234,783 + H281DRAFT_02109 0.63 +0.4
234,783 + H281DRAFT_02109 0.63 -1.1
234,783 + H281DRAFT_02109 0.63 +1.4
234,783 + H281DRAFT_02109 0.63 +1.0
234,783 + H281DRAFT_02109 0.63 +1.8
234,783 + H281DRAFT_02109 0.63 +0.3
234,784 - H281DRAFT_02109 0.63 +0.3
234,784 - H281DRAFT_02109 0.63 -1.0
234,784 - H281DRAFT_02109 0.63 +0.1
234,784 - H281DRAFT_02109 0.63 +1.0
234,835 - H281DRAFT_02109 0.69 +0.8
234,835 - H281DRAFT_02109 0.69 -0.4
234,835 - H281DRAFT_02109 0.69 -0.2
234,876 + H281DRAFT_02109 0.73 +0.1
234,877 - H281DRAFT_02109 0.73 -0.0
234,877 - H281DRAFT_02109 0.73 -0.7
234,910 - H281DRAFT_02109 0.76 -0.4
235,226 - +0.1
235,226 - +0.3
235,226 - -2.5
235,229 + -0.4
235,229 + +0.0
235,229 + -1.0
235,230 - -0.2
235,230 - +0.3
235,240 + +0.3
235,241 - +0.2
235,413 + -0.7
235,414 - +1.1
235,831 + H281DRAFT_02110 0.18 +1.0
235,831 + H281DRAFT_02110 0.18 +1.1
235,898 + H281DRAFT_02110 0.20 -1.0
235,899 - H281DRAFT_02110 0.20 -0.1
235,899 - H281DRAFT_02110 0.20 -0.1
235,921 + H281DRAFT_02110 0.21 -1.2
236,011 + H281DRAFT_02110 0.23 +0.1
236,012 - H281DRAFT_02110 0.23 -0.4
236,089 + H281DRAFT_02110 0.25 -0.5
236,089 + H281DRAFT_02110 0.25 +0.4
236,089 + H281DRAFT_02110 0.25 +2.3
236,089 + H281DRAFT_02110 0.25 -0.3
236,090 - H281DRAFT_02110 0.25 -0.7
236,102 - H281DRAFT_02110 0.26 +1.2
236,191 + +2.4
236,221 + H281DRAFT_02110 0.29 +0.2
236,222 - H281DRAFT_02110 0.29 +0.1
236,222 - H281DRAFT_02110 0.29 -0.1
236,516 - H281DRAFT_02110 0.38 +0.2
236,576 - H281DRAFT_02110 0.40 -0.2
236,576 - H281DRAFT_02110 0.40 -0.7
236,609 - H281DRAFT_02110 0.41 -0.4
236,835 - H281DRAFT_02110 0.47 -0.9
236,862 - H281DRAFT_02110 0.48 -0.5
236,895 + H281DRAFT_02110 0.49 -0.7
236,896 - H281DRAFT_02110 0.49 +0.7
236,938 + H281DRAFT_02110 0.50 -0.4
237,148 + H281DRAFT_02110 0.57 +1.7
237,181 + H281DRAFT_02110 0.58 +1.6
237,181 + H281DRAFT_02110 0.58 -0.4
237,302 - H281DRAFT_02110 0.61 +0.3
237,302 - H281DRAFT_02110 0.61 -1.1
237,308 - H281DRAFT_02110 0.61 -0.2
237,541 + H281DRAFT_02110 0.68 +0.1
237,542 - H281DRAFT_02110 0.68 -0.6
237,542 - H281DRAFT_02110 0.68 -0.6
237,542 - H281DRAFT_02110 0.68 -1.2
237,542 - H281DRAFT_02110 0.68 +0.1
237,706 + H281DRAFT_02110 0.73 -0.5
237,707 - H281DRAFT_02110 0.73 +0.9
237,707 - H281DRAFT_02110 0.73 +1.0
237,867 - H281DRAFT_02110 0.78 +0.0
237,932 + H281DRAFT_02110 0.80 +0.2
237,932 + H281DRAFT_02110 0.80 +0.1
237,933 - H281DRAFT_02110 0.80 +0.1
237,967 - H281DRAFT_02110 0.81 -0.7
238,252 + H281DRAFT_02110 0.89 -0.9
238,252 + H281DRAFT_02110 0.89 +0.5
238,363 + +1.1
238,384 + +0.0
238,461 + +0.7
238,461 + +1.2
238,462 - -1.5
238,673 + -0.4
238,675 + +0.7
238,747 + +0.2
238,748 - -0.9
238,748 - -0.6
238,748 - -0.1
239,102 - H281DRAFT_02111 0.38 +0.1
239,102 - H281DRAFT_02111 0.38 -0.0
239,164 + H281DRAFT_02111 0.45 -1.1
239,329 + H281DRAFT_02111 0.62 +0.6
239,485 + H281DRAFT_02111 0.79 -0.4
239,489 - H281DRAFT_02111 0.79 +0.1
239,489 - H281DRAFT_02111 0.79 +0.9

Or see this region's nucleotide sequence