Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01669 and H281DRAFT_01670 overlap by 4 nucleotides H281DRAFT_01670 and H281DRAFT_01671 are separated by 22 nucleotides H281DRAFT_01671 and H281DRAFT_01672 are separated by 652 nucleotides
H281DRAFT_01669: H281DRAFT_01669 - NAD(P)H dehydrogenase (quinone), at 549,531 to 550,238
_01669
H281DRAFT_01670: H281DRAFT_01670 - Enoyl-CoA hydratase/carnithine racemase, at 550,235 to 550,987
_01670
H281DRAFT_01671: H281DRAFT_01671 - indolepyruvate ferredoxin oxidoreductase, at 551,010 to 554,564
_01671
H281DRAFT_01672: H281DRAFT_01672 - transcriptional regulator, AsnC family, at 555,217 to 555,783
_01672
Position (kb) 551
552
553
554
555 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 550.045 kb on + strand, within H281DRAFT_01669 at 550.118 kb on - strand at 550.420 kb on - strand, within H281DRAFT_01670 at 550.420 kb on - strand, within H281DRAFT_01670 at 550.588 kb on + strand, within H281DRAFT_01670 at 550.743 kb on - strand, within H281DRAFT_01670 at 550.832 kb on + strand, within H281DRAFT_01670 at 550.833 kb on - strand, within H281DRAFT_01670 at 551.499 kb on - strand at 551.500 kb on + strand, within H281DRAFT_01671 at 551.525 kb on + strand, within H281DRAFT_01671 at 551.587 kb on + strand, within H281DRAFT_01671 at 551.809 kb on - strand, within H281DRAFT_01671 at 552.038 kb on + strand, within H281DRAFT_01671 at 552.151 kb on + strand, within H281DRAFT_01671 at 552.237 kb on - strand, within H281DRAFT_01671 at 552.363 kb on + strand, within H281DRAFT_01671 at 552.364 kb on - strand, within H281DRAFT_01671 at 552.629 kb on - strand, within H281DRAFT_01671 at 552.680 kb on - strand, within H281DRAFT_01671 at 552.680 kb on - strand, within H281DRAFT_01671 at 552.704 kb on - strand, within H281DRAFT_01671 at 552.783 kb on + strand, within H281DRAFT_01671 at 552.784 kb on - strand, within H281DRAFT_01671 at 552.791 kb on - strand, within H281DRAFT_01671 at 552.919 kb on + strand, within H281DRAFT_01671 at 552.925 kb on - strand, within H281DRAFT_01671 at 553.119 kb on - strand, within H281DRAFT_01671 at 553.121 kb on - strand, within H281DRAFT_01671 at 553.121 kb on - strand, within H281DRAFT_01671 at 553.121 kb on - strand, within H281DRAFT_01671 at 553.169 kb on + strand, within H281DRAFT_01671 at 553.175 kb on + strand, within H281DRAFT_01671 at 553.175 kb on + strand, within H281DRAFT_01671 at 553.176 kb on - strand, within H281DRAFT_01671 at 553.176 kb on - strand, within H281DRAFT_01671 at 553.360 kb on + strand, within H281DRAFT_01671 at 553.605 kb on + strand, within H281DRAFT_01671 at 553.673 kb on - strand, within H281DRAFT_01671 at 553.673 kb on - strand, within H281DRAFT_01671 at 553.783 kb on - strand, within H281DRAFT_01671 at 553.809 kb on + strand, within H281DRAFT_01671 at 553.810 kb on - strand, within H281DRAFT_01671 at 553.997 kb on - strand, within H281DRAFT_01671 at 554.245 kb on - strand at 554.477 kb on - strand at 554.618 kb on + strand at 554.619 kb on - strand at 554.619 kb on - strand at 554.619 kb on - strand at 554.821 kb on + strand at 554.822 kb on - strand at 554.822 kb on - strand at 554.822 kb on - strand at 554.869 kb on - strand at 554.956 kb on - strand at 555.011 kb on + strand at 555.011 kb on + strand at 555.248 kb on + strand at 555.248 kb on + strand at 555.249 kb on - strand at 555.249 kb on - strand at 555.249 kb on - strand at 555.253 kb on - strand at 555.253 kb on - strand at 555.333 kb on + strand, within H281DRAFT_01672
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM remove 550,045 + H281DRAFT_01669 0.73 -1.2 550,118 - +1.8 550,420 - H281DRAFT_01670 0.25 -1.0 550,420 - H281DRAFT_01670 0.25 +0.1 550,588 + H281DRAFT_01670 0.47 -0.2 550,743 - H281DRAFT_01670 0.67 -0.4 550,832 + H281DRAFT_01670 0.79 -0.1 550,833 - H281DRAFT_01670 0.79 -0.9 551,499 - +3.9 551,500 + H281DRAFT_01671 0.14 +0.2 551,525 + H281DRAFT_01671 0.14 +0.2 551,587 + H281DRAFT_01671 0.16 -0.2 551,809 - H281DRAFT_01671 0.22 -0.1 552,038 + H281DRAFT_01671 0.29 -0.5 552,151 + H281DRAFT_01671 0.32 +0.4 552,237 - H281DRAFT_01671 0.35 +0.4 552,363 + H281DRAFT_01671 0.38 -0.4 552,364 - H281DRAFT_01671 0.38 +0.6 552,629 - H281DRAFT_01671 0.46 +0.6 552,680 - H281DRAFT_01671 0.47 -1.0 552,680 - H281DRAFT_01671 0.47 +0.2 552,704 - H281DRAFT_01671 0.48 +0.8 552,783 + H281DRAFT_01671 0.50 -0.4 552,784 - H281DRAFT_01671 0.50 +0.4 552,791 - H281DRAFT_01671 0.50 +0.6 552,919 + H281DRAFT_01671 0.54 -0.5 552,925 - H281DRAFT_01671 0.54 -1.4 553,119 - H281DRAFT_01671 0.59 +1.2 553,121 - H281DRAFT_01671 0.59 +0.8 553,121 - H281DRAFT_01671 0.59 -0.6 553,121 - H281DRAFT_01671 0.59 -2.6 553,169 + H281DRAFT_01671 0.61 -0.7 553,175 + H281DRAFT_01671 0.61 +0.1 553,175 + H281DRAFT_01671 0.61 -0.3 553,176 - H281DRAFT_01671 0.61 -0.6 553,176 - H281DRAFT_01671 0.61 +0.1 553,360 + H281DRAFT_01671 0.66 -0.3 553,605 + H281DRAFT_01671 0.73 +0.2 553,673 - H281DRAFT_01671 0.75 +0.7 553,673 - H281DRAFT_01671 0.75 -1.0 553,783 - H281DRAFT_01671 0.78 +2.3 553,809 + H281DRAFT_01671 0.79 -0.8 553,810 - H281DRAFT_01671 0.79 +0.5 553,997 - H281DRAFT_01671 0.84 +0.2 554,245 - -0.5 554,477 - -0.6 554,618 + -0.8 554,619 - +0.1 554,619 - +1.3 554,619 - +0.0 554,821 + +1.7 554,822 - -1.7 554,822 - +0.4 554,822 - -0.5 554,869 - -0.7 554,956 - +0.4 555,011 + +0.4 555,011 + +0.3 555,248 + +0.1 555,248 + +1.8 555,249 - +0.2 555,249 - +0.6 555,249 - +0.0 555,253 - -0.3 555,253 - -0.9 555,333 + H281DRAFT_01672 0.20 -0.7
Or see this region's nucleotide sequence