Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01616 and H281DRAFT_01617 are separated by 434 nucleotides H281DRAFT_01617 and H281DRAFT_01618 are separated by 1 nucleotides
H281DRAFT_01616: H281DRAFT_01616 - hypothetical protein, at 497,783 to 498,343
_01616
H281DRAFT_01617: H281DRAFT_01617 - hypothetical protein, at 498,778 to 498,990
_01617
H281DRAFT_01618: H281DRAFT_01618 - Outer membrane protein (porin), at 498,992 to 500,143
_01618
Position (kb) 498
499 Strain fitness (log2 ratio) -2
-1
0
1 at 497.910 kb on + strand, within H281DRAFT_01616 at 497.984 kb on + strand, within H281DRAFT_01616 at 497.985 kb on - strand, within H281DRAFT_01616 at 497.985 kb on - strand, within H281DRAFT_01616 at 497.985 kb on - strand, within H281DRAFT_01616 at 498.380 kb on + strand at 498.380 kb on + strand at 498.557 kb on - strand at 498.649 kb on + strand at 498.650 kb on - strand at 498.711 kb on - strand at 498.751 kb on + strand at 498.811 kb on + strand, within H281DRAFT_01617 at 498.893 kb on + strand, within H281DRAFT_01617 at 499.070 kb on + strand at 499.070 kb on + strand at 499.071 kb on - strand at 499.138 kb on + strand, within H281DRAFT_01618 at 499.160 kb on + strand, within H281DRAFT_01618 at 499.310 kb on + strand, within H281DRAFT_01618 at 499.356 kb on - strand, within H281DRAFT_01618 at 499.481 kb on + strand, within H281DRAFT_01618 at 499.481 kb on + strand, within H281DRAFT_01618 at 499.508 kb on + strand, within H281DRAFT_01618 at 499.509 kb on - strand, within H281DRAFT_01618 at 499.571 kb on + strand, within H281DRAFT_01618 at 499.571 kb on + strand, within H281DRAFT_01618 at 499.604 kb on + strand, within H281DRAFT_01618 at 499.605 kb on - strand, within H281DRAFT_01618 at 499.700 kb on + strand, within H281DRAFT_01618 at 499.701 kb on - strand, within H281DRAFT_01618 at 499.701 kb on - strand, within H281DRAFT_01618 at 499.701 kb on - strand at 499.701 kb on - strand, within H281DRAFT_01618 at 499.718 kb on + strand, within H281DRAFT_01618 at 499.718 kb on + strand, within H281DRAFT_01618 at 499.759 kb on + strand, within H281DRAFT_01618 at 499.759 kb on + strand, within H281DRAFT_01618 at 499.844 kb on + strand, within H281DRAFT_01618 at 499.844 kb on + strand, within H281DRAFT_01618 at 499.845 kb on - strand, within H281DRAFT_01618 at 499.899 kb on - strand, within H281DRAFT_01618 at 499.957 kb on + strand, within H281DRAFT_01618 at 499.957 kb on + strand, within H281DRAFT_01618 at 499.958 kb on - strand, within H281DRAFT_01618 at 499.980 kb on - strand, within H281DRAFT_01618
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM remove 497,910 + H281DRAFT_01616 0.23 +1.3 497,984 + H281DRAFT_01616 0.36 -0.1 497,985 - H281DRAFT_01616 0.36 +0.5 497,985 - H281DRAFT_01616 0.36 -0.8 497,985 - H281DRAFT_01616 0.36 -0.8 498,380 + -0.2 498,380 + +0.3 498,557 - -1.8 498,649 + -2.4 498,650 - -0.0 498,711 - -0.2 498,751 + -0.4 498,811 + H281DRAFT_01617 0.15 +0.3 498,893 + H281DRAFT_01617 0.54 -1.1 499,070 + +0.1 499,070 + +0.1 499,071 - -0.5 499,138 + H281DRAFT_01618 0.13 -0.4 499,160 + H281DRAFT_01618 0.15 +0.4 499,310 + H281DRAFT_01618 0.28 -0.1 499,356 - H281DRAFT_01618 0.32 -1.1 499,481 + H281DRAFT_01618 0.42 +0.1 499,481 + H281DRAFT_01618 0.42 -0.5 499,508 + H281DRAFT_01618 0.45 -0.3 499,509 - H281DRAFT_01618 0.45 -0.1 499,571 + H281DRAFT_01618 0.50 -0.0 499,571 + H281DRAFT_01618 0.50 -0.5 499,604 + H281DRAFT_01618 0.53 +0.5 499,605 - H281DRAFT_01618 0.53 -0.3 499,700 + H281DRAFT_01618 0.61 -0.5 499,701 - H281DRAFT_01618 0.62 +0.2 499,701 - H281DRAFT_01618 0.62 +0.0 499,701 - +0.2 499,701 - H281DRAFT_01618 0.62 -1.2 499,718 + H281DRAFT_01618 0.63 +0.0 499,718 + H281DRAFT_01618 0.63 -0.4 499,759 + H281DRAFT_01618 0.67 +0.4 499,759 + H281DRAFT_01618 0.67 +0.7 499,844 + H281DRAFT_01618 0.74 -0.1 499,844 + H281DRAFT_01618 0.74 -1.2 499,845 - H281DRAFT_01618 0.74 -0.1 499,899 - H281DRAFT_01618 0.79 -0.3 499,957 + H281DRAFT_01618 0.84 -0.5 499,957 + H281DRAFT_01618 0.84 +0.2 499,958 - H281DRAFT_01618 0.84 -0.2 499,980 - H281DRAFT_01618 0.86 -0.8
Or see this region's nucleotide sequence