Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01498 and H281DRAFT_01499 are separated by 103 nucleotides H281DRAFT_01499 and H281DRAFT_01500 are separated by 22 nucleotides H281DRAFT_01500 and H281DRAFT_01501 are separated by 12 nucleotides
H281DRAFT_01498: H281DRAFT_01498 - transcriptional regulator, LysR family, at 368,012 to 368,908
_01498
H281DRAFT_01499: H281DRAFT_01499 - hypothetical protein, at 369,012 to 370,241
_01499
H281DRAFT_01500: H281DRAFT_01500 - hypothetical protein, at 370,264 to 370,692
_01500
H281DRAFT_01501: H281DRAFT_01501 - hypothetical protein, at 370,705 to 371,823
_01501
Position (kb) 369
370
371 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 368.020 kb on - strand at 368.370 kb on + strand, within H281DRAFT_01498 at 368.370 kb on + strand, within H281DRAFT_01498 at 368.371 kb on - strand, within H281DRAFT_01498 at 368.526 kb on - strand, within H281DRAFT_01498 at 368.734 kb on - strand, within H281DRAFT_01498 at 368.835 kb on - strand at 368.838 kb on - strand at 368.955 kb on + strand at 368.956 kb on - strand at 369.147 kb on + strand, within H281DRAFT_01499 at 369.265 kb on + strand, within H281DRAFT_01499 at 369.266 kb on - strand, within H281DRAFT_01499 at 369.285 kb on + strand, within H281DRAFT_01499 at 369.343 kb on + strand, within H281DRAFT_01499 at 369.343 kb on + strand, within H281DRAFT_01499 at 369.344 kb on - strand, within H281DRAFT_01499 at 369.489 kb on + strand, within H281DRAFT_01499 at 369.489 kb on + strand, within H281DRAFT_01499 at 369.489 kb on + strand, within H281DRAFT_01499 at 369.555 kb on + strand, within H281DRAFT_01499 at 369.945 kb on + strand, within H281DRAFT_01499 at 369.945 kb on + strand, within H281DRAFT_01499 at 369.946 kb on - strand, within H281DRAFT_01499 at 369.946 kb on - strand, within H281DRAFT_01499 at 369.946 kb on - strand, within H281DRAFT_01499 at 370.666 kb on + strand at 370.666 kb on + strand at 370.666 kb on + strand at 370.671 kb on + strand at 370.685 kb on - strand at 370.727 kb on + strand at 370.728 kb on - strand at 370.788 kb on - strand at 370.805 kb on - strand at 370.808 kb on + strand at 370.829 kb on + strand, within H281DRAFT_01501 at 370.830 kb on - strand, within H281DRAFT_01501 at 370.850 kb on + strand, within H281DRAFT_01501 at 370.850 kb on + strand, within H281DRAFT_01501 at 370.851 kb on - strand, within H281DRAFT_01501 at 370.904 kb on + strand, within H281DRAFT_01501 at 370.904 kb on + strand, within H281DRAFT_01501 at 370.905 kb on - strand, within H281DRAFT_01501 at 370.955 kb on + strand, within H281DRAFT_01501 at 371.013 kb on - strand, within H281DRAFT_01501 at 371.182 kb on + strand, within H281DRAFT_01501
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM remove 368,020 - +0.2 368,370 + H281DRAFT_01498 0.40 +0.3 368,370 + H281DRAFT_01498 0.40 -0.6 368,371 - H281DRAFT_01498 0.40 -0.3 368,526 - H281DRAFT_01498 0.57 -0.3 368,734 - H281DRAFT_01498 0.80 -0.2 368,835 - -0.5 368,838 - +0.1 368,955 + -0.0 368,956 - -1.0 369,147 + H281DRAFT_01499 0.11 +1.6 369,265 + H281DRAFT_01499 0.21 +0.3 369,266 - H281DRAFT_01499 0.21 +0.4 369,285 + H281DRAFT_01499 0.22 +0.8 369,343 + H281DRAFT_01499 0.27 -0.8 369,343 + H281DRAFT_01499 0.27 -0.0 369,344 - H281DRAFT_01499 0.27 -1.8 369,489 + H281DRAFT_01499 0.39 -1.3 369,489 + H281DRAFT_01499 0.39 -0.3 369,489 + H281DRAFT_01499 0.39 -0.1 369,555 + H281DRAFT_01499 0.44 -0.1 369,945 + H281DRAFT_01499 0.76 -1.1 369,945 + H281DRAFT_01499 0.76 -0.1 369,946 - H281DRAFT_01499 0.76 +0.6 369,946 - H281DRAFT_01499 0.76 -1.1 369,946 - H281DRAFT_01499 0.76 +0.1 370,666 + +1.3 370,666 + +0.3 370,666 + +3.1 370,671 + -0.4 370,685 - -0.9 370,727 + -1.3 370,728 - -0.2 370,788 - -0.4 370,805 - +0.3 370,808 + -1.0 370,829 + H281DRAFT_01501 0.11 +1.4 370,830 - H281DRAFT_01501 0.11 -0.4 370,850 + H281DRAFT_01501 0.13 +1.2 370,850 + H281DRAFT_01501 0.13 +0.6 370,851 - H281DRAFT_01501 0.13 -0.1 370,904 + H281DRAFT_01501 0.18 +0.1 370,904 + H281DRAFT_01501 0.18 +0.2 370,905 - H281DRAFT_01501 0.18 +0.6 370,955 + H281DRAFT_01501 0.22 +0.8 371,013 - H281DRAFT_01501 0.28 +0.1 371,182 + H281DRAFT_01501 0.43 -2.2
Or see this region's nucleotide sequence