Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01353 and H281DRAFT_01354 are separated by 264 nucleotides H281DRAFT_01354 and H281DRAFT_01355 are separated by 142 nucleotides
H281DRAFT_01353: H281DRAFT_01353 - Predicted dithiol-disulfide oxidoreductase, DUF899 family, at 196,438 to 197,166
_01353
H281DRAFT_01354: H281DRAFT_01354 - DNA-binding transcriptional regulator, LysR family, at 197,431 to 198,357
_01354
H281DRAFT_01355: H281DRAFT_01355 - Predicted arabinose efflux permease, MFS family, at 198,500 to 199,750
_01355
Position (kb) 197
198
199 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 196.439 kb on + strand at 196.628 kb on - strand, within H281DRAFT_01353 at 196.689 kb on + strand, within H281DRAFT_01353 at 196.689 kb on + strand, within H281DRAFT_01353 at 196.707 kb on - strand, within H281DRAFT_01353 at 196.842 kb on + strand, within H281DRAFT_01353 at 196.889 kb on + strand, within H281DRAFT_01353 at 196.890 kb on - strand, within H281DRAFT_01353 at 197.039 kb on - strand, within H281DRAFT_01353 at 197.948 kb on - strand, within H281DRAFT_01354 at 198.330 kb on - strand at 198.362 kb on + strand at 198.621 kb on + strand at 199.198 kb on + strand, within H281DRAFT_01355 at 199.244 kb on + strand, within H281DRAFT_01355 at 199.245 kb on - strand, within H281DRAFT_01355
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM remove 196,439 + +0.7 196,628 - H281DRAFT_01353 0.26 -0.6 196,689 + H281DRAFT_01353 0.34 +0.9 196,689 + H281DRAFT_01353 0.34 -3.8 196,707 - H281DRAFT_01353 0.37 -1.5 196,842 + H281DRAFT_01353 0.55 -1.4 196,889 + H281DRAFT_01353 0.62 +3.7 196,890 - H281DRAFT_01353 0.62 -0.2 197,039 - H281DRAFT_01353 0.82 +0.9 197,948 - H281DRAFT_01354 0.56 +0.5 198,330 - +0.1 198,362 + -0.1 198,621 + -0.6 199,198 + H281DRAFT_01355 0.56 +2.7 199,244 + H281DRAFT_01355 0.59 -0.5 199,245 - H281DRAFT_01355 0.60 -1.6
Or see this region's nucleotide sequence