Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01170 and H281DRAFT_01171 overlap by 4 nucleotides H281DRAFT_01171 and H281DRAFT_01172 are separated by 220 nucleotides
H281DRAFT_01170: H281DRAFT_01170 - Alkyl sulfatase BDS1, metallo-beta-lactamase superfamily, at 1,904 to 3,889
_01170
H281DRAFT_01171: H281DRAFT_01171 - alcohol dehydrogenase, propanol-preferring, at 3,886 to 4,956
_01171
H281DRAFT_01172: H281DRAFT_01172 - NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family, at 5,177 to 5,965
_01172
Position (kb) 3
4
5 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 3.396 kb on + strand, within H281DRAFT_01170 at 3.586 kb on + strand, within H281DRAFT_01170 at 3.586 kb on + strand, within H281DRAFT_01170 at 3.587 kb on - strand, within H281DRAFT_01170 at 3.700 kb on - strand at 4.112 kb on - strand, within H281DRAFT_01171 at 4.149 kb on - strand, within H281DRAFT_01171 at 4.347 kb on + strand, within H281DRAFT_01171 at 4.613 kb on - strand, within H281DRAFT_01171 at 4.971 kb on + strand at 4.971 kb on + strand at 4.972 kb on - strand at 4.976 kb on - strand at 5.037 kb on + strand at 5.038 kb on - strand at 5.294 kb on - strand, within H281DRAFT_01172
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM remove 3,396 + H281DRAFT_01170 0.75 -0.4 3,586 + H281DRAFT_01170 0.85 -3.3 3,586 + H281DRAFT_01170 0.85 -0.2 3,587 - H281DRAFT_01170 0.85 -0.1 3,700 - +0.8 4,112 - H281DRAFT_01171 0.21 -2.6 4,149 - H281DRAFT_01171 0.25 -1.0 4,347 + H281DRAFT_01171 0.43 +1.2 4,613 - H281DRAFT_01171 0.68 -0.1 4,971 + -1.0 4,971 + -1.1 4,972 - -0.6 4,976 - +1.5 5,037 + +0.1 5,038 - -1.1 5,294 - H281DRAFT_01172 0.15 -1.9
Or see this region's nucleotide sequence