Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01098 and H281DRAFT_01099 are separated by 114 nucleotides H281DRAFT_01099 and H281DRAFT_01100 are separated by 23 nucleotides H281DRAFT_01100 and H281DRAFT_01101 are separated by 201 nucleotides
H281DRAFT_01098: H281DRAFT_01098 - hypothetical protein, at 1,234,260 to 1,235,210
_01098
H281DRAFT_01099: H281DRAFT_01099 - XapX domain-containing protein, at 1,235,325 to 1,235,630
_01099
H281DRAFT_01100: H281DRAFT_01100 - hypothetical protein, at 1,235,654 to 1,236,295
_01100
H281DRAFT_01101: H281DRAFT_01101 - Small-conductance mechanosensitive channel, at 1,236,497 to 1,237,966
_01101
Position (kb) 1235
1236 Strain fitness (log2 ratio) -1
0
1 at 1234.335 kb on - strand at 1234.336 kb on + strand at 1234.661 kb on - strand, within H281DRAFT_01098 at 1234.811 kb on + strand, within H281DRAFT_01098 at 1234.903 kb on + strand, within H281DRAFT_01098 at 1235.024 kb on - strand, within H281DRAFT_01098 at 1235.217 kb on + strand at 1235.623 kb on + strand at 1235.865 kb on + strand, within H281DRAFT_01100 at 1235.981 kb on + strand, within H281DRAFT_01100 at 1235.981 kb on + strand, within H281DRAFT_01100 at 1235.981 kb on + strand, within H281DRAFT_01100 at 1236.309 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM remove 1,234,335 - -0.3 1,234,336 + -0.3 1,234,661 - H281DRAFT_01098 0.42 -0.5 1,234,811 + H281DRAFT_01098 0.58 -0.7 1,234,903 + H281DRAFT_01098 0.68 +0.3 1,235,024 - H281DRAFT_01098 0.80 +0.1 1,235,217 + -1.6 1,235,623 + +0.9 1,235,865 + H281DRAFT_01100 0.33 +0.7 1,235,981 + H281DRAFT_01100 0.51 -0.6 1,235,981 + H281DRAFT_01100 0.51 -0.3 1,235,981 + H281DRAFT_01100 0.51 +0.2 1,236,309 + +0.2
Or see this region's nucleotide sequence