Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00194 and H281DRAFT_00195 are separated by 195 nucleotides H281DRAFT_00195 and H281DRAFT_00196 are separated by 173 nucleotides H281DRAFT_00196 and H281DRAFT_00197 are separated by 54 nucleotides
H281DRAFT_00194: H281DRAFT_00194 - argininosuccinate lyase, at 207,973 to 209,379
_00194
H281DRAFT_00195: H281DRAFT_00195 - transcriptional regulator, XRE family, at 209,575 to 210,399
_00195
H281DRAFT_00196: H281DRAFT_00196 - Ubiquinone/menaquinone biosynthesis C-methylase UbiE, at 210,573 to 211,325
_00196
H281DRAFT_00197: H281DRAFT_00197 - Phosphoenolpyruvate carboxylase, type 1, at 211,380 to 214,589
_00197
Position (kb) 209
210
211 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 208.589 kb on - strand, within H281DRAFT_00194 at 209.173 kb on - strand, within H281DRAFT_00194 at 209.299 kb on - strand at 209.299 kb on - strand at 209.300 kb on + strand at 209.404 kb on + strand at 209.404 kb on + strand at 209.405 kb on - strand at 209.405 kb on - strand at 209.405 kb on - strand at 209.415 kb on + strand at 209.464 kb on - strand at 209.632 kb on - strand at 209.883 kb on + strand, within H281DRAFT_00195 at 209.883 kb on + strand, within H281DRAFT_00195 at 209.987 kb on + strand, within H281DRAFT_00195 at 209.987 kb on + strand, within H281DRAFT_00195 at 209.987 kb on + strand, within H281DRAFT_00195 at 209.988 kb on - strand, within H281DRAFT_00195 at 209.988 kb on - strand, within H281DRAFT_00195 at 210.001 kb on + strand, within H281DRAFT_00195 at 210.096 kb on - strand, within H281DRAFT_00195 at 210.191 kb on + strand, within H281DRAFT_00195 at 210.191 kb on + strand, within H281DRAFT_00195 at 210.192 kb on - strand, within H281DRAFT_00195 at 210.192 kb on - strand, within H281DRAFT_00195 at 210.192 kb on - strand, within H281DRAFT_00195 at 210.429 kb on + strand at 210.429 kb on + strand at 210.430 kb on - strand at 210.442 kb on - strand at 210.477 kb on - strand at 210.568 kb on + strand at 210.625 kb on - strand at 210.778 kb on - strand, within H281DRAFT_00196 at 210.874 kb on + strand, within H281DRAFT_00196 at 211.040 kb on + strand, within H281DRAFT_00196 at 211.040 kb on + strand, within H281DRAFT_00196 at 211.041 kb on - strand, within H281DRAFT_00196 at 211.077 kb on - strand, within H281DRAFT_00196 at 211.274 kb on - strand at 211.274 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM remove 208,589 - H281DRAFT_00194 0.44 -3.6 209,173 - H281DRAFT_00194 0.85 -3.1 209,299 - -0.2 209,299 - -3.5 209,300 + -0.7 209,404 + -3.1 209,404 + -3.2 209,405 - +0.6 209,405 - +0.1 209,405 - +0.7 209,415 + -2.8 209,464 - -1.0 209,632 - -0.4 209,883 + H281DRAFT_00195 0.37 +0.0 209,883 + H281DRAFT_00195 0.37 -0.1 209,987 + H281DRAFT_00195 0.50 -0.9 209,987 + H281DRAFT_00195 0.50 +0.5 209,987 + H281DRAFT_00195 0.50 +0.8 209,988 - H281DRAFT_00195 0.50 -0.2 209,988 - H281DRAFT_00195 0.50 +0.8 210,001 + H281DRAFT_00195 0.52 +0.3 210,096 - H281DRAFT_00195 0.63 -1.2 210,191 + H281DRAFT_00195 0.75 +0.2 210,191 + H281DRAFT_00195 0.75 +1.0 210,192 - H281DRAFT_00195 0.75 -0.9 210,192 - H281DRAFT_00195 0.75 +0.3 210,192 - H281DRAFT_00195 0.75 -0.1 210,429 + +0.1 210,429 + -1.7 210,430 - +0.7 210,442 - -0.5 210,477 - -0.9 210,568 + +0.6 210,625 - -0.4 210,778 - H281DRAFT_00196 0.27 -0.9 210,874 + H281DRAFT_00196 0.40 -2.7 211,040 + H281DRAFT_00196 0.62 -0.5 211,040 + H281DRAFT_00196 0.62 -2.0 211,041 - H281DRAFT_00196 0.62 -0.1 211,077 - H281DRAFT_00196 0.67 -0.4 211,274 - +0.5 211,274 - -0.6
Or see this region's nucleotide sequence