Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00143 and H281DRAFT_00144 overlap by 8 nucleotides H281DRAFT_00144 and H281DRAFT_00145 overlap by 1 nucleotides H281DRAFT_00145 and H281DRAFT_00146 are separated by 89 nucleotides
H281DRAFT_00143: H281DRAFT_00143 - L-threonine O-3-phosphate decarboxylase, at 148,417 to 149,523
_00143
H281DRAFT_00144: H281DRAFT_00144 - adenosylcobinamide-phosphate synthase (EC 6.3.1.10), at 149,516 to 150,451
_00144
H281DRAFT_00145: H281DRAFT_00145 - adenosylcobinamide kinase /adenosylcobinamide-phosphate guanylyltransferase, at 150,451 to 151,005
_00145
H281DRAFT_00146: H281DRAFT_00146 - adenosylcobyric acid synthase (glutamine-hydrolysing), at 151,095 to 152,609
_00146
Position (kb) 149
150
151 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 149.062 kb on + strand, within H281DRAFT_00143 at 149.062 kb on + strand, within H281DRAFT_00143 at 149.062 kb on + strand, within H281DRAFT_00143 at 149.062 kb on + strand, within H281DRAFT_00143 at 149.063 kb on - strand, within H281DRAFT_00143 at 149.124 kb on - strand, within H281DRAFT_00143 at 149.243 kb on + strand, within H281DRAFT_00143 at 149.581 kb on + strand at 149.582 kb on - strand at 149.582 kb on - strand at 149.582 kb on - strand at 149.674 kb on - strand, within H281DRAFT_00144 at 149.674 kb on - strand, within H281DRAFT_00144 at 150.322 kb on - strand, within H281DRAFT_00144 at 150.560 kb on + strand, within H281DRAFT_00145 at 150.715 kb on + strand, within H281DRAFT_00145 at 150.715 kb on + strand, within H281DRAFT_00145 at 150.715 kb on + strand, within H281DRAFT_00145 at 150.716 kb on - strand, within H281DRAFT_00145 at 150.716 kb on - strand, within H281DRAFT_00145 at 150.733 kb on + strand, within H281DRAFT_00145 at 150.733 kb on + strand, within H281DRAFT_00145 at 150.733 kb on + strand, within H281DRAFT_00145 at 150.733 kb on + strand, within H281DRAFT_00145 at 150.905 kb on + strand, within H281DRAFT_00145 at 151.017 kb on - strand at 151.050 kb on - strand at 151.070 kb on + strand at 151.127 kb on - strand at 151.184 kb on + strand at 151.202 kb on - strand at 151.444 kb on - strand, within H281DRAFT_00146
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM remove 149,062 + H281DRAFT_00143 0.58 -1.8 149,062 + H281DRAFT_00143 0.58 -1.6 149,062 + H281DRAFT_00143 0.58 -2.5 149,062 + H281DRAFT_00143 0.58 -4.6 149,063 - H281DRAFT_00143 0.58 -2.3 149,124 - H281DRAFT_00143 0.64 +0.3 149,243 + H281DRAFT_00143 0.75 -1.5 149,581 + -1.9 149,582 - -0.1 149,582 - -2.2 149,582 - -4.0 149,674 - H281DRAFT_00144 0.17 -2.3 149,674 - H281DRAFT_00144 0.17 +2.2 150,322 - H281DRAFT_00144 0.86 -2.3 150,560 + H281DRAFT_00145 0.20 +0.1 150,715 + H281DRAFT_00145 0.48 -0.7 150,715 + H281DRAFT_00145 0.48 -1.7 150,715 + H281DRAFT_00145 0.48 -2.7 150,716 - H281DRAFT_00145 0.48 -1.6 150,716 - H281DRAFT_00145 0.48 -2.3 150,733 + H281DRAFT_00145 0.51 -1.7 150,733 + H281DRAFT_00145 0.51 -3.9 150,733 + H281DRAFT_00145 0.51 -2.5 150,733 + H281DRAFT_00145 0.51 -2.1 150,905 + H281DRAFT_00145 0.82 -4.3 151,017 - +0.5 151,050 - -1.0 151,070 + -0.9 151,127 - +0.7 151,184 + -3.8 151,202 - -2.4 151,444 - H281DRAFT_00146 0.23 -1.5
Or see this region's nucleotide sequence