Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00138

Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00137 and H281DRAFT_00138 overlap by 4 nucleotidesH281DRAFT_00138 and H281DRAFT_00139 are separated by 37 nucleotides H281DRAFT_00137: H281DRAFT_00137 - iron complex transport system permease protein, at 142,960 to 144,018 _00137 H281DRAFT_00138: H281DRAFT_00138 - iron complex transport system ATP-binding protein, at 144,015 to 144,854 _00138 H281DRAFT_00139: H281DRAFT_00139 - nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, at 144,892 to 145,953 _00139 Position (kb) 144 145Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 143.293 kb on + strand, within H281DRAFT_00137at 143.293 kb on + strand, within H281DRAFT_00137at 143.294 kb on - strand, within H281DRAFT_00137at 143.294 kb on - strand, within H281DRAFT_00137at 143.297 kb on + strand, within H281DRAFT_00137at 143.298 kb on - strand, within H281DRAFT_00137at 143.300 kb on + strand, within H281DRAFT_00137at 143.743 kb on + strand, within H281DRAFT_00137at 143.823 kb on + strand, within H281DRAFT_00137at 143.823 kb on + strandat 143.856 kb on + strand, within H281DRAFT_00137at 143.856 kb on + strand, within H281DRAFT_00137at 143.856 kb on + strand, within H281DRAFT_00137at 143.856 kb on + strand, within H281DRAFT_00137at 143.856 kb on + strand, within H281DRAFT_00137at 143.857 kb on - strand, within H281DRAFT_00137at 143.898 kb on - strand, within H281DRAFT_00137at 144.236 kb on + strand, within H281DRAFT_00138at 144.237 kb on - strand, within H281DRAFT_00138at 144.237 kb on - strand, within H281DRAFT_00138at 144.237 kb on - strand, within H281DRAFT_00138at 144.237 kb on - strand, within H281DRAFT_00138at 144.237 kb on - strand, within H281DRAFT_00138at 144.436 kb on + strand, within H281DRAFT_00138at 144.718 kb on + strand, within H281DRAFT_00138at 144.719 kb on - strand, within H281DRAFT_00138at 144.877 kb on - strandat 144.930 kb on - strandat 144.951 kb on - strandat 145.054 kb on - strand, within H281DRAFT_00139at 145.054 kb on - strand, within H281DRAFT_00139at 145.281 kb on + strand, within H281DRAFT_00139at 145.747 kb on + strand, within H281DRAFT_00139at 145.747 kb on + strandat 145.748 kb on - strand, within H281DRAFT_00139at 145.801 kb on + strand, within H281DRAFT_00139at 145.824 kb on - strand, within H281DRAFT_00139

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM
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143,293 + H281DRAFT_00137 0.31 -0.7
143,293 + H281DRAFT_00137 0.31 -0.3
143,294 - H281DRAFT_00137 0.32 -1.1
143,294 - H281DRAFT_00137 0.32 +0.3
143,297 + H281DRAFT_00137 0.32 +2.1
143,298 - H281DRAFT_00137 0.32 -0.1
143,300 + H281DRAFT_00137 0.32 -0.1
143,743 + H281DRAFT_00137 0.74 -0.5
143,823 + H281DRAFT_00137 0.81 -0.3
143,823 + +0.9
143,856 + H281DRAFT_00137 0.85 -1.9
143,856 + H281DRAFT_00137 0.85 +0.6
143,856 + H281DRAFT_00137 0.85 +0.9
143,856 + H281DRAFT_00137 0.85 -0.6
143,856 + H281DRAFT_00137 0.85 -0.2
143,857 - H281DRAFT_00137 0.85 +0.1
143,898 - H281DRAFT_00137 0.89 -1.1
144,236 + H281DRAFT_00138 0.26 +0.0
144,237 - H281DRAFT_00138 0.26 -0.9
144,237 - H281DRAFT_00138 0.26 -1.0
144,237 - H281DRAFT_00138 0.26 -1.9
144,237 - H281DRAFT_00138 0.26 -0.8
144,237 - H281DRAFT_00138 0.26 +0.2
144,436 + H281DRAFT_00138 0.50 -0.4
144,718 + H281DRAFT_00138 0.84 +0.7
144,719 - H281DRAFT_00138 0.84 +0.4
144,877 - -0.7
144,930 - -1.3
144,951 - -2.3
145,054 - H281DRAFT_00139 0.15 -2.2
145,054 - H281DRAFT_00139 0.15 -2.3
145,281 + H281DRAFT_00139 0.37 -1.5
145,747 + H281DRAFT_00139 0.81 -3.8
145,747 + +0.3
145,748 - H281DRAFT_00139 0.81 -2.3
145,801 + H281DRAFT_00139 0.86 -3.3
145,824 - H281DRAFT_00139 0.88 -3.9

Or see this region's nucleotide sequence