Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03832

Experiment: PYE with benzoic 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03831 and CCNA_03832 are separated by 16 nucleotidesCCNA_03832 and CCNA_03833 are separated by 17 nucleotidesCCNA_03833 and CCNA_03834 are separated by 65 nucleotides CCNA_03831: CCNA_03831 - major facilitator superfamily transporter, at 3,995,750 to 3,997,351 _03831 CCNA_03832: CCNA_03832 - TetR-family transcriptional regulator, at 3,997,368 to 3,997,976 _03832 CCNA_03833: CCNA_03833 - enoyl-(acyl-carrier protein) reductase FabI, at 3,997,994 to 3,998,809 _03833 CCNA_03834: CCNA_03834 - tetratricopeptide repeat family protein, at 3,998,875 to 4,000,665 _03834 Position (kb) 3997 3998Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3996.391 kb on + strand, within CCNA_03831at 3996.414 kb on + strand, within CCNA_03831at 3996.476 kb on + strand, within CCNA_03831at 3996.476 kb on - strand, within CCNA_03831at 3996.503 kb on - strand, within CCNA_03831at 3996.542 kb on - strand, within CCNA_03831at 3996.554 kb on + strand, within CCNA_03831at 3996.563 kb on - strand, within CCNA_03831at 3996.618 kb on + strand, within CCNA_03831at 3996.645 kb on - strand, within CCNA_03831at 3996.681 kb on + strand, within CCNA_03831at 3996.705 kb on - strand, within CCNA_03831at 3996.708 kb on + strand, within CCNA_03831at 3996.735 kb on + strand, within CCNA_03831at 3996.771 kb on + strand, within CCNA_03831at 3996.834 kb on + strand, within CCNA_03831at 3996.871 kb on - strand, within CCNA_03831at 3996.871 kb on - strand, within CCNA_03831at 3997.047 kb on - strand, within CCNA_03831at 3997.103 kb on - strand, within CCNA_03831at 3997.111 kb on + strand, within CCNA_03831at 3997.116 kb on + strand, within CCNA_03831at 3997.119 kb on - strand, within CCNA_03831at 3997.170 kb on + strand, within CCNA_03831at 3997.184 kb on + strand, within CCNA_03831at 3997.251 kb on + strandat 3997.251 kb on + strandat 3997.259 kb on - strandat 3997.391 kb on - strandat 3997.483 kb on + strand, within CCNA_03832at 3997.499 kb on + strand, within CCNA_03832at 3997.500 kb on - strand, within CCNA_03832at 3997.500 kb on - strand, within CCNA_03832at 3997.584 kb on - strand, within CCNA_03832at 3997.623 kb on + strand, within CCNA_03832at 3997.629 kb on + strand, within CCNA_03832at 3997.629 kb on + strand, within CCNA_03832at 3997.629 kb on + strand, within CCNA_03832at 3997.736 kb on + strand, within CCNA_03832at 3997.822 kb on + strand, within CCNA_03832at 3997.897 kb on + strand, within CCNA_03832at 3997.917 kb on + strandat 3997.917 kb on - strandat 3997.944 kb on + strandat 3997.969 kb on - strandat 3997.971 kb on + strandat 3997.971 kb on + strandat 3997.971 kb on + strandat 3997.976 kb on + strandat 3997.976 kb on + strandat 3997.976 kb on + strandat 3997.976 kb on + strandat 3997.979 kb on - strandat 3997.979 kb on - strandat 3997.979 kb on - strandat 3997.986 kb on + strandat 3997.991 kb on + strandat 3997.991 kb on + strandat 3997.992 kb on + strandat 3997.999 kb on - strandat 3998.010 kb on - strandat 3998.834 kb on + strandat 3998.852 kb on - strandat 3998.871 kb on + strandat 3998.891 kb on - strandat 3998.930 kb on + strandat 3998.973 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with benzoic 0.2 mg/ml
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3,996,391 + CCNA_03831 0.40 +0.5
3,996,414 + CCNA_03831 0.41 +0.4
3,996,476 + CCNA_03831 0.45 +0.5
3,996,476 - CCNA_03831 0.45 +0.5
3,996,503 - CCNA_03831 0.47 -0.7
3,996,542 - CCNA_03831 0.49 +1.8
3,996,554 + CCNA_03831 0.50 +0.9
3,996,563 - CCNA_03831 0.51 +0.6
3,996,618 + CCNA_03831 0.54 +0.7
3,996,645 - CCNA_03831 0.56 -0.8
3,996,681 + CCNA_03831 0.58 +1.1
3,996,705 - CCNA_03831 0.60 +0.3
3,996,708 + CCNA_03831 0.60 +1.1
3,996,735 + CCNA_03831 0.61 -0.2
3,996,771 + CCNA_03831 0.64 +1.5
3,996,834 + CCNA_03831 0.68 +0.9
3,996,871 - CCNA_03831 0.70 +0.2
3,996,871 - CCNA_03831 0.70 -0.3
3,997,047 - CCNA_03831 0.81 -1.0
3,997,103 - CCNA_03831 0.84 -0.5
3,997,111 + CCNA_03831 0.85 -0.9
3,997,116 + CCNA_03831 0.85 +0.7
3,997,119 - CCNA_03831 0.85 -0.3
3,997,170 + CCNA_03831 0.89 +0.1
3,997,184 + CCNA_03831 0.90 -0.4
3,997,251 + +0.1
3,997,251 + -0.1
3,997,259 - -0.2
3,997,391 - +0.1
3,997,483 + CCNA_03832 0.19 -1.8
3,997,499 + CCNA_03832 0.22 -2.4
3,997,500 - CCNA_03832 0.22 -0.9
3,997,500 - CCNA_03832 0.22 -0.2
3,997,584 - CCNA_03832 0.35 -1.8
3,997,623 + CCNA_03832 0.42 -1.3
3,997,629 + CCNA_03832 0.43 -1.9
3,997,629 + CCNA_03832 0.43 -3.1
3,997,629 + CCNA_03832 0.43 +0.8
3,997,736 + CCNA_03832 0.60 -1.9
3,997,822 + CCNA_03832 0.75 -0.8
3,997,897 + CCNA_03832 0.87 -3.2
3,997,917 + -3.6
3,997,917 - -1.8
3,997,944 + -2.3
3,997,969 - +0.3
3,997,971 + -0.8
3,997,971 + +0.8
3,997,971 + +1.2
3,997,976 + +0.1
3,997,976 + +0.2
3,997,976 + -0.9
3,997,976 + -1.3
3,997,979 - +1.7
3,997,979 - +1.4
3,997,979 - +1.3
3,997,986 + +1.8
3,997,991 + -0.5
3,997,991 + +1.8
3,997,992 + -0.6
3,997,999 - +1.7
3,998,010 - +0.7
3,998,834 + -0.3
3,998,852 - +0.7
3,998,871 + -0.0
3,998,891 - +0.1
3,998,930 + -2.3
3,998,973 + +2.4

Or see this region's nucleotide sequence