Experiment: PYE with benzoic 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03557 and CCNA_03558 are separated by 207 nucleotides CCNA_03558 and CCNA_03559 overlap by 1 nucleotides CCNA_03559 and CCNA_03560 overlap by 1 nucleotides
CCNA_03557: CCNA_03557 - hypothetical protein, at 3,713,085 to 3,713,810
_03557
CCNA_03558: CCNA_03558 - ATP synthase epsilon chain, at 3,714,018 to 3,714,278
_03558
CCNA_03559: CCNA_03559 - hypothetical protein, at 3,714,278 to 3,714,529
_03559
CCNA_03560: CCNA_03560 - ATP synthase beta chain, at 3,714,529 to 3,716,148
_03560
Position (kb)
3714
3715 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3713.045 kb on + strand at 3713.053 kb on - strand at 3713.072 kb on + strand at 3713.106 kb on - strand at 3713.111 kb on - strand at 3713.165 kb on - strand, within CCNA_03557 at 3713.244 kb on + strand, within CCNA_03557 at 3713.293 kb on + strand, within CCNA_03557 at 3713.316 kb on - strand, within CCNA_03557 at 3713.338 kb on - strand, within CCNA_03557 at 3713.362 kb on + strand, within CCNA_03557 at 3713.370 kb on - strand, within CCNA_03557 at 3713.389 kb on - strand, within CCNA_03557 at 3713.391 kb on + strand, within CCNA_03557 at 3713.391 kb on + strand, within CCNA_03557 at 3713.399 kb on - strand, within CCNA_03557 at 3713.461 kb on + strand, within CCNA_03557 at 3713.469 kb on - strand, within CCNA_03557 at 3713.514 kb on + strand, within CCNA_03557 at 3713.546 kb on + strand, within CCNA_03557 at 3713.547 kb on - strand, within CCNA_03557 at 3713.554 kb on - strand, within CCNA_03557 at 3713.554 kb on - strand, within CCNA_03557 at 3713.554 kb on - strand, within CCNA_03557 at 3713.554 kb on - strand, within CCNA_03557 at 3713.578 kb on + strand, within CCNA_03557 at 3713.586 kb on - strand, within CCNA_03557 at 3713.602 kb on + strand, within CCNA_03557 at 3713.632 kb on + strand, within CCNA_03557 at 3713.670 kb on - strand, within CCNA_03557 at 3713.677 kb on + strand, within CCNA_03557 at 3713.719 kb on + strand, within CCNA_03557 at 3713.746 kb on - strand at 3713.782 kb on + strand at 3713.795 kb on - strand at 3713.800 kb on - strand at 3713.874 kb on - strand at 3713.991 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with benzoic 0.2 mg/ml remove 3,713,045 + -0.3 3,713,053 - +2.7 3,713,072 + +0.0 3,713,106 - +3.0 3,713,111 - +2.1 3,713,165 - CCNA_03557 0.11 +2.2 3,713,244 + CCNA_03557 0.22 -3.6 3,713,293 + CCNA_03557 0.29 +0.8 3,713,316 - CCNA_03557 0.32 +2.2 3,713,338 - CCNA_03557 0.35 +2.5 3,713,362 + CCNA_03557 0.38 +1.6 3,713,370 - CCNA_03557 0.39 +2.2 3,713,389 - CCNA_03557 0.42 +2.7 3,713,391 + CCNA_03557 0.42 -0.1 3,713,391 + CCNA_03557 0.42 -2.6 3,713,399 - CCNA_03557 0.43 +0.5 3,713,461 + CCNA_03557 0.52 -0.7 3,713,469 - CCNA_03557 0.53 +2.5 3,713,514 + CCNA_03557 0.59 -1.8 3,713,546 + CCNA_03557 0.63 +0.6 3,713,547 - CCNA_03557 0.64 +2.2 3,713,554 - CCNA_03557 0.65 +1.8 3,713,554 - CCNA_03557 0.65 +2.3 3,713,554 - CCNA_03557 0.65 +1.9 3,713,554 - CCNA_03557 0.65 +1.9 3,713,578 + CCNA_03557 0.68 +0.9 3,713,586 - CCNA_03557 0.69 +2.7 3,713,602 + CCNA_03557 0.71 -0.8 3,713,632 + CCNA_03557 0.75 -2.7 3,713,670 - CCNA_03557 0.81 +2.0 3,713,677 + CCNA_03557 0.82 -0.4 3,713,719 + CCNA_03557 0.87 -0.3 3,713,746 - +1.9 3,713,782 + -2.1 3,713,795 - +1.5 3,713,800 - +1.8 3,713,874 - +1.9 3,713,991 - +2.8
Or see this region's nucleotide sequence