Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03558

Experiment: PYE with benzoic 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03557 and CCNA_03558 are separated by 207 nucleotidesCCNA_03558 and CCNA_03559 overlap by 1 nucleotidesCCNA_03559 and CCNA_03560 overlap by 1 nucleotides CCNA_03557: CCNA_03557 - hypothetical protein, at 3,713,085 to 3,713,810 _03557 CCNA_03558: CCNA_03558 - ATP synthase epsilon chain, at 3,714,018 to 3,714,278 _03558 CCNA_03559: CCNA_03559 - hypothetical protein, at 3,714,278 to 3,714,529 _03559 CCNA_03560: CCNA_03560 - ATP synthase beta chain, at 3,714,529 to 3,716,148 _03560 Position (kb) 3714 3715Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3713.045 kb on + strandat 3713.053 kb on - strandat 3713.072 kb on + strandat 3713.106 kb on - strandat 3713.111 kb on - strandat 3713.165 kb on - strand, within CCNA_03557at 3713.244 kb on + strand, within CCNA_03557at 3713.293 kb on + strand, within CCNA_03557at 3713.316 kb on - strand, within CCNA_03557at 3713.338 kb on - strand, within CCNA_03557at 3713.362 kb on + strand, within CCNA_03557at 3713.370 kb on - strand, within CCNA_03557at 3713.389 kb on - strand, within CCNA_03557at 3713.391 kb on + strand, within CCNA_03557at 3713.391 kb on + strand, within CCNA_03557at 3713.399 kb on - strand, within CCNA_03557at 3713.461 kb on + strand, within CCNA_03557at 3713.469 kb on - strand, within CCNA_03557at 3713.514 kb on + strand, within CCNA_03557at 3713.546 kb on + strand, within CCNA_03557at 3713.547 kb on - strand, within CCNA_03557at 3713.554 kb on - strand, within CCNA_03557at 3713.554 kb on - strand, within CCNA_03557at 3713.554 kb on - strand, within CCNA_03557at 3713.554 kb on - strand, within CCNA_03557at 3713.578 kb on + strand, within CCNA_03557at 3713.586 kb on - strand, within CCNA_03557at 3713.602 kb on + strand, within CCNA_03557at 3713.632 kb on + strand, within CCNA_03557at 3713.670 kb on - strand, within CCNA_03557at 3713.677 kb on + strand, within CCNA_03557at 3713.719 kb on + strand, within CCNA_03557at 3713.746 kb on - strandat 3713.782 kb on + strandat 3713.795 kb on - strandat 3713.800 kb on - strandat 3713.874 kb on - strandat 3713.991 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with benzoic 0.2 mg/ml
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3,713,045 + -0.3
3,713,053 - +2.7
3,713,072 + +0.0
3,713,106 - +3.0
3,713,111 - +2.1
3,713,165 - CCNA_03557 0.11 +2.2
3,713,244 + CCNA_03557 0.22 -3.6
3,713,293 + CCNA_03557 0.29 +0.8
3,713,316 - CCNA_03557 0.32 +2.2
3,713,338 - CCNA_03557 0.35 +2.5
3,713,362 + CCNA_03557 0.38 +1.6
3,713,370 - CCNA_03557 0.39 +2.2
3,713,389 - CCNA_03557 0.42 +2.7
3,713,391 + CCNA_03557 0.42 -0.1
3,713,391 + CCNA_03557 0.42 -2.6
3,713,399 - CCNA_03557 0.43 +0.5
3,713,461 + CCNA_03557 0.52 -0.7
3,713,469 - CCNA_03557 0.53 +2.5
3,713,514 + CCNA_03557 0.59 -1.8
3,713,546 + CCNA_03557 0.63 +0.6
3,713,547 - CCNA_03557 0.64 +2.2
3,713,554 - CCNA_03557 0.65 +1.8
3,713,554 - CCNA_03557 0.65 +2.3
3,713,554 - CCNA_03557 0.65 +1.9
3,713,554 - CCNA_03557 0.65 +1.9
3,713,578 + CCNA_03557 0.68 +0.9
3,713,586 - CCNA_03557 0.69 +2.7
3,713,602 + CCNA_03557 0.71 -0.8
3,713,632 + CCNA_03557 0.75 -2.7
3,713,670 - CCNA_03557 0.81 +2.0
3,713,677 + CCNA_03557 0.82 -0.4
3,713,719 + CCNA_03557 0.87 -0.3
3,713,746 - +1.9
3,713,782 + -2.1
3,713,795 - +1.5
3,713,800 - +1.8
3,713,874 - +1.9
3,713,991 - +2.8

Or see this region's nucleotide sequence