Experiment: PYE with benzoic 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02432 and CCNA_02433 are separated by 120 nucleotides CCNA_02433 and CCNA_02434 are separated by 187 nucleotides CCNA_02434 and CCNA_02435 are separated by 2 nucleotides
CCNA_02432: CCNA_02432 - nucleobase-cation-symport-1 (NCS1) transporter, at 2,573,283 to 2,574,749
_02432
CCNA_02433: CCNA_02433 - hypothetical protein, at 2,574,870 to 2,575,064
_02433
CCNA_02434: CCNA_02434 - hypothetical protein, at 2,575,252 to 2,575,692
_02434
CCNA_02435: CCNA_02435 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 2,575,695 to 2,576,984
_02435
Position (kb)
2575
2576 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2574.350 kb on + strand, within CCNA_02432 at 2574.432 kb on + strand, within CCNA_02432 at 2574.445 kb on - strand, within CCNA_02432 at 2574.472 kb on + strand, within CCNA_02432 at 2574.485 kb on - strand, within CCNA_02432 at 2574.485 kb on - strand, within CCNA_02432 at 2574.485 kb on - strand, within CCNA_02432 at 2574.495 kb on - strand, within CCNA_02432 at 2574.499 kb on + strand, within CCNA_02432 at 2574.499 kb on + strand, within CCNA_02432 at 2574.499 kb on + strand, within CCNA_02432 at 2574.502 kb on - strand, within CCNA_02432 at 2574.507 kb on - strand, within CCNA_02432 at 2574.507 kb on - strand, within CCNA_02432 at 2574.507 kb on - strand, within CCNA_02432 at 2574.509 kb on + strand, within CCNA_02432 at 2574.509 kb on + strand, within CCNA_02432 at 2574.509 kb on + strand, within CCNA_02432 at 2574.549 kb on - strand, within CCNA_02432 at 2574.563 kb on + strand, within CCNA_02432 at 2574.566 kb on + strand, within CCNA_02432 at 2574.589 kb on + strand, within CCNA_02432 at 2574.597 kb on - strand, within CCNA_02432 at 2574.615 kb on + strand at 2574.616 kb on - strand at 2574.628 kb on - strand at 2574.643 kb on + strand at 2574.643 kb on + strand at 2574.692 kb on + strand at 2574.695 kb on + strand at 2574.696 kb on - strand at 2574.707 kb on + strand at 2574.868 kb on + strand at 2574.868 kb on + strand at 2574.868 kb on + strand at 2574.876 kb on - strand at 2574.881 kb on - strand at 2574.883 kb on + strand at 2574.883 kb on + strand at 2574.883 kb on + strand at 2574.883 kb on + strand at 2574.888 kb on + strand at 2574.891 kb on - strand, within CCNA_02433 at 2574.891 kb on - strand, within CCNA_02433 at 2574.891 kb on - strand, within CCNA_02433 at 2574.891 kb on - strand, within CCNA_02433 at 2574.896 kb on - strand, within CCNA_02433 at 2574.907 kb on + strand, within CCNA_02433 at 2574.922 kb on - strand, within CCNA_02433 at 2574.943 kb on - strand, within CCNA_02433 at 2574.945 kb on + strand, within CCNA_02433 at 2574.945 kb on + strand, within CCNA_02433 at 2574.953 kb on - strand, within CCNA_02433 at 2574.964 kb on + strand, within CCNA_02433 at 2574.991 kb on + strand, within CCNA_02433 at 2574.999 kb on - strand, within CCNA_02433 at 2575.072 kb on + strand at 2575.072 kb on + strand at 2575.073 kb on + strand at 2575.080 kb on - strand at 2575.080 kb on - strand at 2575.080 kb on - strand at 2575.080 kb on - strand at 2575.110 kb on + strand at 2575.118 kb on - strand at 2575.222 kb on + strand at 2575.230 kb on - strand at 2575.230 kb on - strand at 2575.230 kb on - strand at 2575.230 kb on - strand at 2575.249 kb on + strand at 2575.278 kb on - strand at 2575.369 kb on - strand, within CCNA_02434 at 2575.398 kb on + strand, within CCNA_02434 at 2575.418 kb on + strand, within CCNA_02434 at 2575.486 kb on + strand, within CCNA_02434 at 2575.494 kb on - strand, within CCNA_02434 at 2575.494 kb on - strand, within CCNA_02434 at 2575.494 kb on - strand, within CCNA_02434 at 2575.505 kb on + strand, within CCNA_02434 at 2575.623 kb on - strand, within CCNA_02434 at 2575.623 kb on - strand, within CCNA_02434 at 2575.623 kb on - strand, within CCNA_02434 at 2575.647 kb on - strand, within CCNA_02434 at 2575.649 kb on - strand at 2575.673 kb on + strand at 2575.680 kb on - strand at 2575.680 kb on - strand at 2575.690 kb on + strand at 2575.701 kb on - strand at 2575.717 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with benzoic 0.2 mg/ml remove 2,574,350 + CCNA_02432 0.73 -0.8 2,574,432 + CCNA_02432 0.78 -0.4 2,574,445 - CCNA_02432 0.79 +1.3 2,574,472 + CCNA_02432 0.81 -0.5 2,574,485 - CCNA_02432 0.82 -0.5 2,574,485 - CCNA_02432 0.82 +0.2 2,574,485 - CCNA_02432 0.82 +1.7 2,574,495 - CCNA_02432 0.83 -1.0 2,574,499 + CCNA_02432 0.83 -2.3 2,574,499 + CCNA_02432 0.83 -0.8 2,574,499 + CCNA_02432 0.83 -0.8 2,574,502 - CCNA_02432 0.83 -0.0 2,574,507 - CCNA_02432 0.83 -0.9 2,574,507 - CCNA_02432 0.83 -0.0 2,574,507 - CCNA_02432 0.83 -1.4 2,574,509 + CCNA_02432 0.84 -1.2 2,574,509 + CCNA_02432 0.84 +0.4 2,574,509 + CCNA_02432 0.84 +1.0 2,574,549 - CCNA_02432 0.86 +0.6 2,574,563 + CCNA_02432 0.87 +0.8 2,574,566 + CCNA_02432 0.87 +0.7 2,574,589 + CCNA_02432 0.89 -0.3 2,574,597 - CCNA_02432 0.90 +0.3 2,574,615 + -1.4 2,574,616 - -2.2 2,574,628 - -0.4 2,574,643 + -0.0 2,574,643 + -0.4 2,574,692 + -1.5 2,574,695 + -0.8 2,574,696 - -0.7 2,574,707 + +1.5 2,574,868 + -0.8 2,574,868 + -0.2 2,574,868 + -1.8 2,574,876 - +0.0 2,574,881 - -0.1 2,574,883 + -1.1 2,574,883 + -1.1 2,574,883 + -0.5 2,574,883 + -0.7 2,574,888 + -1.3 2,574,891 - CCNA_02433 0.11 +1.4 2,574,891 - CCNA_02433 0.11 +0.8 2,574,891 - CCNA_02433 0.11 +0.5 2,574,891 - CCNA_02433 0.11 +0.7 2,574,896 - CCNA_02433 0.13 -0.2 2,574,907 + CCNA_02433 0.19 -1.0 2,574,922 - CCNA_02433 0.27 +1.3 2,574,943 - CCNA_02433 0.37 +0.2 2,574,945 + CCNA_02433 0.38 -1.5 2,574,945 + CCNA_02433 0.38 +1.0 2,574,953 - CCNA_02433 0.43 +1.4 2,574,964 + CCNA_02433 0.48 +0.5 2,574,991 + CCNA_02433 0.62 +1.0 2,574,999 - CCNA_02433 0.66 -0.5 2,575,072 + +0.2 2,575,072 + -0.0 2,575,073 + -0.2 2,575,080 - -1.5 2,575,080 - -0.2 2,575,080 - +0.2 2,575,080 - -0.6 2,575,110 + +0.1 2,575,118 - -0.0 2,575,222 + -0.9 2,575,230 - -0.1 2,575,230 - -0.2 2,575,230 - +2.0 2,575,230 - +0.3 2,575,249 + -1.7 2,575,278 - +2.8 2,575,369 - CCNA_02434 0.27 +1.2 2,575,398 + CCNA_02434 0.33 -0.0 2,575,418 + CCNA_02434 0.38 -0.7 2,575,486 + CCNA_02434 0.53 +0.1 2,575,494 - CCNA_02434 0.55 +1.7 2,575,494 - CCNA_02434 0.55 +1.7 2,575,494 - CCNA_02434 0.55 +1.5 2,575,505 + CCNA_02434 0.57 -2.4 2,575,623 - CCNA_02434 0.84 +1.0 2,575,623 - CCNA_02434 0.84 +2.2 2,575,623 - CCNA_02434 0.84 +0.7 2,575,647 - CCNA_02434 0.90 +0.8 2,575,649 - +1.3 2,575,673 + +0.5 2,575,680 - +1.1 2,575,680 - +2.2 2,575,690 + -0.6 2,575,701 - +2.4 2,575,717 + -1.0
Or see this region's nucleotide sequence