Experiment: PYE with benzoic 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01651 and CCNA_01652 are separated by 26 nucleotides CCNA_01652 and CCNA_01653 are separated by 157 nucleotides CCNA_01653 and CCNA_01654 overlap by 4 nucleotides CCNA_01654 and CCNA_01655 are separated by 91 nucleotides
CCNA_01651: CCNA_01651 - DNA gyrase subunit A, at 1,771,304 to 1,774,063
_01651
CCNA_01652: CCNA_01652 - phosphopantetheine adenylyltransferase, at 1,774,090 to 1,774,581
_01652
CCNA_01653: CCNA_01653 - cyclophilin-type peptidylprolyl cis-trans isomerase, at 1,774,739 to 1,775,572
_01653
CCNA_01654: CCNA_01654 - cyclophilin-type peptidylprolyl cis-trans isomerase, at 1,775,569 to 1,776,417
_01654
CCNA_01655: CCNA_01655 - cyclophilin-type peptidylprolyl cis-trans isomerase, at 1,776,509 to 1,776,976
_01655
Position (kb)
1774
1775
1776 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1774.039 kb on - strand at 1774.076 kb on + strand at 1774.576 kb on + strand at 1774.584 kb on - strand at 1774.720 kb on + strand at 1774.720 kb on + strand at 1774.730 kb on + strand at 1774.747 kb on + strand at 1774.791 kb on + strand at 1774.799 kb on - strand at 1774.799 kb on - strand at 1774.808 kb on + strand at 1774.811 kb on - strand at 1774.833 kb on + strand, within CCNA_01653 at 1774.838 kb on + strand, within CCNA_01653 at 1774.841 kb on - strand, within CCNA_01653 at 1774.841 kb on - strand, within CCNA_01653 at 1774.856 kb on - strand, within CCNA_01653 at 1774.896 kb on + strand, within CCNA_01653 at 1774.899 kb on - strand, within CCNA_01653 at 1774.915 kb on - strand, within CCNA_01653 at 1774.918 kb on + strand, within CCNA_01653 at 1774.969 kb on - strand, within CCNA_01653 at 1774.997 kb on + strand, within CCNA_01653 at 1775.027 kb on - strand, within CCNA_01653 at 1775.103 kb on + strand, within CCNA_01653 at 1775.134 kb on + strand, within CCNA_01653 at 1775.164 kb on - strand, within CCNA_01653 at 1775.198 kb on - strand, within CCNA_01653 at 1775.248 kb on - strand, within CCNA_01653 at 1775.260 kb on - strand, within CCNA_01653 at 1775.275 kb on + strand, within CCNA_01653 at 1775.314 kb on + strand, within CCNA_01653 at 1775.322 kb on - strand, within CCNA_01653 at 1775.322 kb on - strand, within CCNA_01653 at 1775.324 kb on + strand, within CCNA_01653 at 1775.324 kb on + strand, within CCNA_01653 at 1775.324 kb on + strand, within CCNA_01653 at 1775.332 kb on - strand, within CCNA_01653 at 1775.332 kb on - strand, within CCNA_01653 at 1775.332 kb on - strand, within CCNA_01653 at 1775.351 kb on + strand, within CCNA_01653 at 1775.354 kb on - strand, within CCNA_01653 at 1775.364 kb on - strand, within CCNA_01653 at 1775.506 kb on + strand at 1775.563 kb on + strand at 1775.590 kb on + strand at 1775.598 kb on - strand at 1775.608 kb on - strand at 1775.638 kb on + strand at 1775.656 kb on - strand, within CCNA_01654 at 1775.815 kb on - strand, within CCNA_01654 at 1775.817 kb on + strand, within CCNA_01654 at 1775.842 kb on + strand, within CCNA_01654 at 1775.850 kb on - strand, within CCNA_01654 at 1775.869 kb on + strand, within CCNA_01654 at 1775.888 kb on + strand, within CCNA_01654 at 1775.896 kb on - strand, within CCNA_01654 at 1775.944 kb on - strand, within CCNA_01654 at 1775.944 kb on - strand, within CCNA_01654 at 1775.978 kb on + strand, within CCNA_01654 at 1776.067 kb on - strand, within CCNA_01654 at 1776.068 kb on - strand, within CCNA_01654 at 1776.138 kb on + strand, within CCNA_01654 at 1776.138 kb on + strand, within CCNA_01654 at 1776.138 kb on + strand, within CCNA_01654 at 1776.159 kb on + strand, within CCNA_01654 at 1776.194 kb on + strand, within CCNA_01654 at 1776.293 kb on + strand, within CCNA_01654 at 1776.294 kb on + strand, within CCNA_01654 at 1776.302 kb on - strand, within CCNA_01654 at 1776.382 kb on + strand at 1776.457 kb on + strand at 1776.465 kb on - strand at 1776.507 kb on - strand at 1776.564 kb on + strand, within CCNA_01655 at 1776.572 kb on - strand, within CCNA_01655
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with benzoic 0.2 mg/ml remove 1,774,039 - -0.7 1,774,076 + +2.5 1,774,576 + +1.1 1,774,584 - +0.3 1,774,720 + +1.1 1,774,720 + +1.6 1,774,730 + +1.4 1,774,747 + +0.5 1,774,791 + +0.9 1,774,799 - -1.8 1,774,799 - -1.0 1,774,808 + +2.0 1,774,811 - +0.1 1,774,833 + CCNA_01653 0.11 +1.4 1,774,838 + CCNA_01653 0.12 +3.0 1,774,841 - CCNA_01653 0.12 -0.7 1,774,841 - CCNA_01653 0.12 -1.6 1,774,856 - CCNA_01653 0.14 -1.4 1,774,896 + CCNA_01653 0.19 +1.7 1,774,899 - CCNA_01653 0.19 -1.0 1,774,915 - CCNA_01653 0.21 -2.0 1,774,918 + CCNA_01653 0.21 +2.0 1,774,969 - CCNA_01653 0.28 -2.8 1,774,997 + CCNA_01653 0.31 +1.8 1,775,027 - CCNA_01653 0.35 +0.5 1,775,103 + CCNA_01653 0.44 +0.7 1,775,134 + CCNA_01653 0.47 +0.6 1,775,164 - CCNA_01653 0.51 +1.3 1,775,198 - CCNA_01653 0.55 +1.0 1,775,248 - CCNA_01653 0.61 -0.8 1,775,260 - CCNA_01653 0.62 -0.0 1,775,275 + CCNA_01653 0.64 +1.2 1,775,314 + CCNA_01653 0.69 +2.3 1,775,322 - CCNA_01653 0.70 +0.8 1,775,322 - CCNA_01653 0.70 -0.9 1,775,324 + CCNA_01653 0.70 +1.0 1,775,324 + CCNA_01653 0.70 +1.3 1,775,324 + CCNA_01653 0.70 +1.3 1,775,332 - CCNA_01653 0.71 -0.6 1,775,332 - CCNA_01653 0.71 +0.6 1,775,332 - CCNA_01653 0.71 -0.7 1,775,351 + CCNA_01653 0.73 +2.4 1,775,354 - CCNA_01653 0.74 +3.4 1,775,364 - CCNA_01653 0.75 +1.3 1,775,506 + +1.8 1,775,563 + +1.0 1,775,590 + +1.5 1,775,598 - -1.7 1,775,608 - +0.6 1,775,638 + +1.3 1,775,656 - CCNA_01654 0.10 +1.1 1,775,815 - CCNA_01654 0.29 -1.3 1,775,817 + CCNA_01654 0.29 +0.7 1,775,842 + CCNA_01654 0.32 +1.3 1,775,850 - CCNA_01654 0.33 -0.0 1,775,869 + CCNA_01654 0.35 +1.3 1,775,888 + CCNA_01654 0.38 +0.5 1,775,896 - CCNA_01654 0.39 -0.5 1,775,944 - CCNA_01654 0.44 +0.5 1,775,944 - CCNA_01654 0.44 +0.6 1,775,978 + CCNA_01654 0.48 +0.6 1,776,067 - CCNA_01654 0.59 -1.5 1,776,068 - CCNA_01654 0.59 -1.7 1,776,138 + CCNA_01654 0.67 +1.0 1,776,138 + CCNA_01654 0.67 +1.4 1,776,138 + CCNA_01654 0.67 +1.1 1,776,159 + CCNA_01654 0.69 +1.0 1,776,194 + CCNA_01654 0.74 +0.8 1,776,293 + CCNA_01654 0.85 +1.8 1,776,294 + CCNA_01654 0.85 +2.0 1,776,302 - CCNA_01654 0.86 -0.2 1,776,382 + +0.8 1,776,457 + +1.2 1,776,465 - -1.5 1,776,507 - +1.5 1,776,564 + CCNA_01655 0.12 +1.3 1,776,572 - CCNA_01655 0.13 -1.0
Or see this region's nucleotide sequence