Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01192

Experiment: PYE with benzoic 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01191 and CCNA_01192 overlap by 4 nucleotidesCCNA_01192 and CCNA_01193 overlap by 19 nucleotides CCNA_01191: CCNA_01191 - transporter, major facilitator superfamily, at 1,311,323 to 1,312,558 _01191 CCNA_01192: CCNA_01192 - sugar kinase, at 1,312,555 to 1,313,478 _01192 CCNA_01193: CCNA_01193 - amylosucrase, at 1,313,460 to 1,315,289 _01193 Position (kb) 1312 1313 1314Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1311.606 kb on + strand, within CCNA_01191at 1311.614 kb on - strand, within CCNA_01191at 1311.614 kb on - strand, within CCNA_01191at 1311.631 kb on + strand, within CCNA_01191at 1311.639 kb on - strand, within CCNA_01191at 1311.667 kb on - strand, within CCNA_01191at 1311.667 kb on - strand, within CCNA_01191at 1311.680 kb on + strand, within CCNA_01191at 1311.680 kb on + strand, within CCNA_01191at 1311.688 kb on - strand, within CCNA_01191at 1311.717 kb on + strand, within CCNA_01191at 1311.717 kb on - strand, within CCNA_01191at 1311.731 kb on + strand, within CCNA_01191at 1311.772 kb on + strand, within CCNA_01191at 1311.780 kb on - strand, within CCNA_01191at 1311.780 kb on - strand, within CCNA_01191at 1311.801 kb on + strand, within CCNA_01191at 1311.813 kb on + strand, within CCNA_01191at 1311.827 kb on - strand, within CCNA_01191at 1311.871 kb on + strand, within CCNA_01191at 1311.909 kb on + strand, within CCNA_01191at 1311.909 kb on + strand, within CCNA_01191at 1311.909 kb on + strand, within CCNA_01191at 1311.909 kb on + strand, within CCNA_01191at 1311.909 kb on + strand, within CCNA_01191at 1311.917 kb on - strand, within CCNA_01191at 1311.917 kb on - strand, within CCNA_01191at 1311.917 kb on - strand, within CCNA_01191at 1311.917 kb on - strand, within CCNA_01191at 1311.917 kb on - strand, within CCNA_01191at 1312.031 kb on + strand, within CCNA_01191at 1312.049 kb on + strand, within CCNA_01191at 1312.056 kb on + strand, within CCNA_01191at 1312.092 kb on + strand, within CCNA_01191at 1312.100 kb on - strand, within CCNA_01191at 1312.111 kb on + strand, within CCNA_01191at 1312.111 kb on + strand, within CCNA_01191at 1312.119 kb on - strand, within CCNA_01191at 1312.129 kb on - strand, within CCNA_01191at 1312.191 kb on - strand, within CCNA_01191at 1312.191 kb on - strand, within CCNA_01191at 1312.205 kb on - strand, within CCNA_01191at 1312.250 kb on + strand, within CCNA_01191at 1312.258 kb on - strand, within CCNA_01191at 1312.312 kb on - strand, within CCNA_01191at 1312.367 kb on - strand, within CCNA_01191at 1312.367 kb on - strand, within CCNA_01191at 1312.402 kb on - strand, within CCNA_01191at 1312.423 kb on + strand, within CCNA_01191at 1312.438 kb on - strandat 1312.552 kb on + strandat 1312.556 kb on - strandat 1312.605 kb on - strandat 1312.618 kb on - strandat 1312.620 kb on + strandat 1312.676 kb on + strand, within CCNA_01192at 1312.686 kb on + strand, within CCNA_01192at 1312.707 kb on - strand, within CCNA_01192at 1312.709 kb on + strand, within CCNA_01192at 1312.730 kb on + strand, within CCNA_01192at 1312.816 kb on - strand, within CCNA_01192at 1312.842 kb on + strand, within CCNA_01192at 1312.849 kb on - strand, within CCNA_01192at 1312.856 kb on + strand, within CCNA_01192at 1312.864 kb on - strand, within CCNA_01192at 1312.912 kb on + strand, within CCNA_01192at 1312.920 kb on - strand, within CCNA_01192at 1312.952 kb on - strand, within CCNA_01192at 1312.963 kb on + strand, within CCNA_01192at 1312.971 kb on - strand, within CCNA_01192at 1312.971 kb on - strand, within CCNA_01192at 1312.989 kb on + strand, within CCNA_01192at 1312.997 kb on - strand, within CCNA_01192at 1312.997 kb on - strand, within CCNA_01192at 1313.046 kb on + strand, within CCNA_01192at 1313.054 kb on - strand, within CCNA_01192at 1313.054 kb on - strand, within CCNA_01192at 1313.094 kb on + strand, within CCNA_01192at 1313.107 kb on + strand, within CCNA_01192at 1313.108 kb on + strand, within CCNA_01192at 1313.116 kb on - strand, within CCNA_01192at 1313.127 kb on + strand, within CCNA_01192at 1313.147 kb on + strand, within CCNA_01192at 1313.148 kb on + strand, within CCNA_01192at 1313.154 kb on - strand, within CCNA_01192at 1313.157 kb on - strand, within CCNA_01192at 1313.181 kb on - strand, within CCNA_01192at 1313.191 kb on - strand, within CCNA_01192at 1313.216 kb on + strand, within CCNA_01192at 1313.235 kb on + strand, within CCNA_01192at 1313.240 kb on + strand, within CCNA_01192at 1313.247 kb on - strand, within CCNA_01192at 1313.255 kb on + strand, within CCNA_01192at 1313.282 kb on - strand, within CCNA_01192at 1313.308 kb on + strand, within CCNA_01192at 1313.316 kb on - strand, within CCNA_01192at 1313.338 kb on - strand, within CCNA_01192at 1313.417 kb on + strandat 1313.568 kb on - strandat 1313.643 kb on + strand, within CCNA_01193at 1313.643 kb on + strand, within CCNA_01193at 1313.651 kb on - strand, within CCNA_01193at 1313.664 kb on - strand, within CCNA_01193at 1313.672 kb on - strand, within CCNA_01193at 1313.693 kb on + strand, within CCNA_01193at 1313.707 kb on - strand, within CCNA_01193at 1313.723 kb on + strand, within CCNA_01193at 1313.727 kb on - strand, within CCNA_01193at 1313.731 kb on - strand, within CCNA_01193at 1313.784 kb on - strand, within CCNA_01193at 1313.807 kb on - strand, within CCNA_01193at 1313.827 kb on - strand, within CCNA_01193at 1313.860 kb on + strand, within CCNA_01193at 1313.876 kb on - strand, within CCNA_01193at 1313.906 kb on - strand, within CCNA_01193at 1313.932 kb on + strand, within CCNA_01193at 1313.984 kb on - strand, within CCNA_01193at 1313.984 kb on - strand, within CCNA_01193at 1313.984 kb on - strand, within CCNA_01193at 1313.997 kb on - strand, within CCNA_01193at 1314.035 kb on + strand, within CCNA_01193at 1314.050 kb on + strand, within CCNA_01193at 1314.077 kb on - strand, within CCNA_01193at 1314.110 kb on - strand, within CCNA_01193at 1314.122 kb on - strand, within CCNA_01193at 1314.152 kb on - strand, within CCNA_01193at 1314.177 kb on - strand, within CCNA_01193at 1314.201 kb on - strand, within CCNA_01193at 1314.201 kb on - strand, within CCNA_01193at 1314.233 kb on + strand, within CCNA_01193at 1314.254 kb on - strand, within CCNA_01193at 1314.290 kb on - strand, within CCNA_01193at 1314.316 kb on - strand, within CCNA_01193at 1314.390 kb on - strand, within CCNA_01193

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with benzoic 0.2 mg/ml
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1,311,606 + CCNA_01191 0.23 -1.3
1,311,614 - CCNA_01191 0.24 -0.8
1,311,614 - CCNA_01191 0.24 -0.1
1,311,631 + CCNA_01191 0.25 +0.4
1,311,639 - CCNA_01191 0.26 +0.1
1,311,667 - CCNA_01191 0.28 -0.9
1,311,667 - CCNA_01191 0.28 -2.4
1,311,680 + CCNA_01191 0.29 +0.1
1,311,680 + CCNA_01191 0.29 -1.9
1,311,688 - CCNA_01191 0.30 +0.9
1,311,717 + CCNA_01191 0.32 -0.5
1,311,717 - CCNA_01191 0.32 -0.9
1,311,731 + CCNA_01191 0.33 -0.1
1,311,772 + CCNA_01191 0.36 -1.0
1,311,780 - CCNA_01191 0.37 -0.7
1,311,780 - CCNA_01191 0.37 -0.6
1,311,801 + CCNA_01191 0.39 -0.5
1,311,813 + CCNA_01191 0.40 +0.5
1,311,827 - CCNA_01191 0.41 -0.8
1,311,871 + CCNA_01191 0.44 -0.5
1,311,909 + CCNA_01191 0.47 -1.2
1,311,909 + CCNA_01191 0.47 +0.4
1,311,909 + CCNA_01191 0.47 -0.5
1,311,909 + CCNA_01191 0.47 +0.3
1,311,909 + CCNA_01191 0.47 -0.6
1,311,917 - CCNA_01191 0.48 -0.0
1,311,917 - CCNA_01191 0.48 -0.9
1,311,917 - CCNA_01191 0.48 -1.0
1,311,917 - CCNA_01191 0.48 +1.5
1,311,917 - CCNA_01191 0.48 -2.5
1,312,031 + CCNA_01191 0.57 +0.9
1,312,049 + CCNA_01191 0.59 -0.5
1,312,056 + CCNA_01191 0.59 -1.6
1,312,092 + CCNA_01191 0.62 -1.4
1,312,100 - CCNA_01191 0.63 +0.2
1,312,111 + CCNA_01191 0.64 -1.7
1,312,111 + CCNA_01191 0.64 -3.3
1,312,119 - CCNA_01191 0.64 -1.4
1,312,129 - CCNA_01191 0.65 +1.5
1,312,191 - CCNA_01191 0.70 -0.6
1,312,191 - CCNA_01191 0.70 -1.8
1,312,205 - CCNA_01191 0.71 +0.5
1,312,250 + CCNA_01191 0.75 -1.6
1,312,258 - CCNA_01191 0.76 -1.6
1,312,312 - CCNA_01191 0.80 +0.1
1,312,367 - CCNA_01191 0.84 -1.7
1,312,367 - CCNA_01191 0.84 -1.2
1,312,402 - CCNA_01191 0.87 -1.9
1,312,423 + CCNA_01191 0.89 -0.6
1,312,438 - -1.5
1,312,552 + +0.0
1,312,556 - +0.4
1,312,605 - -1.5
1,312,618 - -0.5
1,312,620 + -0.1
1,312,676 + CCNA_01192 0.13 -0.2
1,312,686 + CCNA_01192 0.14 -1.2
1,312,707 - CCNA_01192 0.16 +0.3
1,312,709 + CCNA_01192 0.17 -1.0
1,312,730 + CCNA_01192 0.19 -0.7
1,312,816 - CCNA_01192 0.28 +0.0
1,312,842 + CCNA_01192 0.31 -1.8
1,312,849 - CCNA_01192 0.32 -0.8
1,312,856 + CCNA_01192 0.33 +0.1
1,312,864 - CCNA_01192 0.33 +0.1
1,312,912 + CCNA_01192 0.39 +0.7
1,312,920 - CCNA_01192 0.40 +0.9
1,312,952 - CCNA_01192 0.43 +0.8
1,312,963 + CCNA_01192 0.44 -1.1
1,312,971 - CCNA_01192 0.45 +0.3
1,312,971 - CCNA_01192 0.45 +1.6
1,312,989 + CCNA_01192 0.47 -1.5
1,312,997 - CCNA_01192 0.48 -0.1
1,312,997 - CCNA_01192 0.48 -0.3
1,313,046 + CCNA_01192 0.53 +1.7
1,313,054 - CCNA_01192 0.54 +0.0
1,313,054 - CCNA_01192 0.54 +0.8
1,313,094 + CCNA_01192 0.58 -0.3
1,313,107 + CCNA_01192 0.60 +0.9
1,313,108 + CCNA_01192 0.60 -0.3
1,313,116 - CCNA_01192 0.61 -0.4
1,313,127 + CCNA_01192 0.62 -0.9
1,313,147 + CCNA_01192 0.64 +0.6
1,313,148 + CCNA_01192 0.64 -2.4
1,313,154 - CCNA_01192 0.65 -0.3
1,313,157 - CCNA_01192 0.65 +0.5
1,313,181 - CCNA_01192 0.68 +0.1
1,313,191 - CCNA_01192 0.69 +0.1
1,313,216 + CCNA_01192 0.72 -2.2
1,313,235 + CCNA_01192 0.74 +1.1
1,313,240 + CCNA_01192 0.74 +0.0
1,313,247 - CCNA_01192 0.75 +1.3
1,313,255 + CCNA_01192 0.76 -0.7
1,313,282 - CCNA_01192 0.79 +1.4
1,313,308 + CCNA_01192 0.81 +0.3
1,313,316 - CCNA_01192 0.82 +0.5
1,313,338 - CCNA_01192 0.85 +0.4
1,313,417 + -0.2
1,313,568 - +1.7
1,313,643 + CCNA_01193 0.10 -2.5
1,313,643 + CCNA_01193 0.10 +1.6
1,313,651 - CCNA_01193 0.10 +1.6
1,313,664 - CCNA_01193 0.11 +1.5
1,313,672 - CCNA_01193 0.12 +1.6
1,313,693 + CCNA_01193 0.13 +1.5
1,313,707 - CCNA_01193 0.13 +1.4
1,313,723 + CCNA_01193 0.14 -0.4
1,313,727 - CCNA_01193 0.15 +2.0
1,313,731 - CCNA_01193 0.15 +2.1
1,313,784 - CCNA_01193 0.18 +1.4
1,313,807 - CCNA_01193 0.19 +1.9
1,313,827 - CCNA_01193 0.20 +2.2
1,313,860 + CCNA_01193 0.22 -0.4
1,313,876 - CCNA_01193 0.23 +2.0
1,313,906 - CCNA_01193 0.24 +2.0
1,313,932 + CCNA_01193 0.26 +0.7
1,313,984 - CCNA_01193 0.29 +0.7
1,313,984 - CCNA_01193 0.29 +1.9
1,313,984 - CCNA_01193 0.29 +1.2
1,313,997 - CCNA_01193 0.29 +1.5
1,314,035 + CCNA_01193 0.31 +0.7
1,314,050 + CCNA_01193 0.32 -1.1
1,314,077 - CCNA_01193 0.34 +2.1
1,314,110 - CCNA_01193 0.36 +1.7
1,314,122 - CCNA_01193 0.36 +2.3
1,314,152 - CCNA_01193 0.38 +1.6
1,314,177 - CCNA_01193 0.39 +1.4
1,314,201 - CCNA_01193 0.40 +2.1
1,314,201 - CCNA_01193 0.40 +1.4
1,314,233 + CCNA_01193 0.42 +0.4
1,314,254 - CCNA_01193 0.43 +1.6
1,314,290 - CCNA_01193 0.45 +2.1
1,314,316 - CCNA_01193 0.47 +1.9
1,314,390 - CCNA_01193 0.51 +2.5

Or see this region's nucleotide sequence