Experiment: PYE with benzoic 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00884 and CCNA_00885 overlap by 11 nucleotides CCNA_00885 and CCNA_00886 are separated by 206 nucleotides CCNA_00886 and CCNA_00887 are separated by 182 nucleotides CCNA_00887 and CCNA_00888 are separated by 124 nucleotides
CCNA_00884: CCNA_00884 - VapC-like PIN domain ribonuclease toxin, at 963,806 to 964,192
_00884
CCNA_00885: CCNA_00885 - MazE-like antitoxin protein, at 964,182 to 964,730
_00885
CCNA_00886: CCNA_00886 - aspartokinase, at 964,937 to 966,184
_00886
CCNA_00887: CCNA_00887 - hypothetical protein, at 966,367 to 966,831
_00887
CCNA_00888: CCNA_00888 - MCP-signal associated domain protein, at 966,956 to 967,309
_00888
Position (kb) 964
965
966
967 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 963.942 kb on + strand, within CCNA_00884 at 963.950 kb on - strand, within CCNA_00884 at 963.950 kb on - strand, within CCNA_00884 at 963.950 kb on - strand, within CCNA_00884 at 963.973 kb on + strand, within CCNA_00884 at 964.042 kb on + strand, within CCNA_00884 at 964.076 kb on - strand, within CCNA_00884 at 964.091 kb on + strand, within CCNA_00884 at 964.099 kb on - strand, within CCNA_00884 at 964.201 kb on - strand at 964.207 kb on - strand at 964.220 kb on - strand at 964.220 kb on - strand at 964.220 kb on - strand at 964.227 kb on + strand at 964.234 kb on + strand at 964.306 kb on - strand, within CCNA_00885 at 964.327 kb on + strand, within CCNA_00885 at 964.329 kb on - strand, within CCNA_00885 at 964.354 kb on + strand, within CCNA_00885 at 964.359 kb on + strand, within CCNA_00885 at 964.359 kb on + strand, within CCNA_00885 at 964.359 kb on + strand, within CCNA_00885 at 964.378 kb on + strand, within CCNA_00885 at 964.379 kb on - strand, within CCNA_00885 at 964.395 kb on + strand, within CCNA_00885 at 964.398 kb on - strand, within CCNA_00885 at 964.403 kb on - strand, within CCNA_00885 at 964.416 kb on + strand, within CCNA_00885 at 964.423 kb on + strand, within CCNA_00885 at 964.425 kb on - strand, within CCNA_00885 at 964.431 kb on - strand, within CCNA_00885 at 964.431 kb on - strand, within CCNA_00885 at 964.431 kb on - strand, within CCNA_00885 at 964.440 kb on + strand, within CCNA_00885 at 964.440 kb on + strand, within CCNA_00885 at 964.440 kb on + strand, within CCNA_00885 at 964.443 kb on - strand, within CCNA_00885 at 964.448 kb on - strand, within CCNA_00885 at 964.461 kb on + strand, within CCNA_00885 at 964.475 kb on + strand, within CCNA_00885 at 964.475 kb on + strand, within CCNA_00885 at 964.483 kb on - strand, within CCNA_00885 at 964.485 kb on - strand, within CCNA_00885 at 964.525 kb on + strand, within CCNA_00885 at 964.531 kb on + strand, within CCNA_00885 at 964.533 kb on - strand, within CCNA_00885 at 964.554 kb on - strand, within CCNA_00885 at 964.554 kb on - strand, within CCNA_00885 at 964.561 kb on - strand, within CCNA_00885 at 964.577 kb on + strand, within CCNA_00885 at 964.577 kb on + strand, within CCNA_00885 at 964.577 kb on + strand, within CCNA_00885 at 964.585 kb on - strand, within CCNA_00885 at 964.595 kb on - strand, within CCNA_00885 at 964.605 kb on - strand, within CCNA_00885 at 964.669 kb on - strand, within CCNA_00885 at 964.708 kb on - strand at 964.794 kb on - strand at 966.178 kb on + strand at 966.178 kb on + strand at 966.178 kb on + strand at 966.178 kb on + strand at 966.178 kb on + strand at 966.186 kb on - strand at 966.186 kb on - strand at 966.186 kb on - strand at 966.194 kb on - strand at 966.228 kb on + strand at 966.236 kb on - strand at 966.238 kb on + strand at 966.238 kb on + strand at 966.238 kb on + strand at 966.238 kb on + strand at 966.238 kb on + strand at 966.238 kb on + strand at 966.238 kb on + strand at 966.238 kb on + strand at 966.238 kb on + strand at 966.238 kb on + strand at 966.238 kb on + strand at 966.238 kb on + strand at 966.246 kb on - strand at 966.246 kb on - strand at 966.246 kb on - strand at 966.246 kb on - strand at 966.246 kb on - strand at 966.246 kb on - strand at 966.254 kb on + strand at 966.254 kb on + strand at 966.254 kb on + strand at 966.262 kb on - strand at 966.262 kb on - strand at 966.262 kb on - strand at 966.262 kb on - strand at 966.269 kb on + strand at 966.277 kb on - strand at 966.277 kb on - strand at 966.279 kb on - strand at 966.279 kb on - strand at 966.336 kb on - strand at 966.344 kb on - strand at 966.349 kb on - strand at 966.349 kb on - strand at 966.349 kb on - strand at 966.368 kb on + strand at 966.376 kb on + strand at 966.386 kb on - strand at 966.396 kb on + strand at 966.396 kb on + strand at 966.454 kb on - strand, within CCNA_00887 at 966.466 kb on - strand, within CCNA_00887 at 966.479 kb on + strand, within CCNA_00887 at 966.512 kb on + strand, within CCNA_00887 at 966.532 kb on + strand, within CCNA_00887 at 966.539 kb on - strand, within CCNA_00887 at 966.609 kb on + strand, within CCNA_00887 at 966.635 kb on - strand, within CCNA_00887 at 966.657 kb on + strand, within CCNA_00887 at 966.690 kb on + strand, within CCNA_00887 at 966.698 kb on - strand, within CCNA_00887 at 966.698 kb on - strand, within CCNA_00887 at 966.704 kb on - strand, within CCNA_00887 at 966.726 kb on + strand, within CCNA_00887 at 966.737 kb on + strand, within CCNA_00887 at 966.763 kb on + strand, within CCNA_00887 at 966.853 kb on + strand at 966.853 kb on + strand at 966.853 kb on + strand at 966.854 kb on + strand at 966.861 kb on - strand at 966.862 kb on - strand at 966.862 kb on - strand at 966.862 kb on - strand at 966.862 kb on - strand at 966.862 kb on - strand at 966.862 kb on - strand at 966.862 kb on - strand at 966.862 kb on - strand at 966.877 kb on + strand at 966.877 kb on + strand at 966.877 kb on + strand at 966.877 kb on + strand at 966.885 kb on - strand at 966.885 kb on - strand at 966.885 kb on - strand at 966.910 kb on + strand at 966.944 kb on - strand at 966.946 kb on + strand at 966.954 kb on - strand at 966.959 kb on + strand at 967.021 kb on - strand, within CCNA_00888 at 967.022 kb on + strand, within CCNA_00888 at 967.022 kb on + strand, within CCNA_00888 at 967.024 kb on + strand, within CCNA_00888 at 967.030 kb on - strand, within CCNA_00888 at 967.032 kb on - strand, within CCNA_00888 at 967.053 kb on + strand, within CCNA_00888 at 967.066 kb on - strand, within CCNA_00888 at 967.101 kb on + strand, within CCNA_00888 at 967.138 kb on + strand, within CCNA_00888 at 967.154 kb on - strand, within CCNA_00888
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with benzoic 0.2 mg/ml remove 963,942 + CCNA_00884 0.35 -2.3 963,950 - CCNA_00884 0.37 +0.4 963,950 - CCNA_00884 0.37 -1.8 963,950 - CCNA_00884 0.37 -1.0 963,973 + CCNA_00884 0.43 -1.3 964,042 + CCNA_00884 0.61 -0.1 964,076 - CCNA_00884 0.70 +2.0 964,091 + CCNA_00884 0.74 -0.9 964,099 - CCNA_00884 0.76 -0.7 964,201 - -0.3 964,207 - +1.7 964,220 - +2.0 964,220 - +2.2 964,220 - +1.1 964,227 + -2.2 964,234 + -1.4 964,306 - CCNA_00885 0.23 +0.8 964,327 + CCNA_00885 0.26 -1.3 964,329 - CCNA_00885 0.27 +1.6 964,354 + CCNA_00885 0.31 +0.2 964,359 + CCNA_00885 0.32 -1.0 964,359 + CCNA_00885 0.32 +0.4 964,359 + CCNA_00885 0.32 -0.6 964,378 + CCNA_00885 0.36 -2.6 964,379 - CCNA_00885 0.36 +0.8 964,395 + CCNA_00885 0.39 -0.8 964,398 - CCNA_00885 0.39 +1.5 964,403 - CCNA_00885 0.40 +1.5 964,416 + CCNA_00885 0.43 -0.6 964,423 + CCNA_00885 0.44 -0.1 964,425 - CCNA_00885 0.44 +1.3 964,431 - CCNA_00885 0.45 +1.9 964,431 - CCNA_00885 0.45 +2.4 964,431 - CCNA_00885 0.45 +1.8 964,440 + CCNA_00885 0.47 -0.4 964,440 + CCNA_00885 0.47 -0.9 964,440 + CCNA_00885 0.47 -1.2 964,443 - CCNA_00885 0.48 +2.0 964,448 - CCNA_00885 0.48 +2.0 964,461 + CCNA_00885 0.51 -1.6 964,475 + CCNA_00885 0.53 -0.1 964,475 + CCNA_00885 0.53 -0.6 964,483 - CCNA_00885 0.55 +1.9 964,485 - CCNA_00885 0.55 +2.0 964,525 + CCNA_00885 0.62 +1.6 964,531 + CCNA_00885 0.64 -0.0 964,533 - CCNA_00885 0.64 +1.5 964,554 - CCNA_00885 0.68 +0.6 964,554 - CCNA_00885 0.68 +1.7 964,561 - CCNA_00885 0.69 +1.8 964,577 + CCNA_00885 0.72 +0.4 964,577 + CCNA_00885 0.72 -0.2 964,577 + CCNA_00885 0.72 -1.8 964,585 - CCNA_00885 0.73 +2.5 964,595 - CCNA_00885 0.75 +2.0 964,605 - CCNA_00885 0.77 +2.7 964,669 - CCNA_00885 0.89 +3.0 964,708 - +2.7 964,794 - -1.4 966,178 + +1.7 966,178 + +1.2 966,178 + +1.8 966,178 + +1.4 966,178 + +1.3 966,186 - +0.6 966,186 - -2.1 966,186 - -0.1 966,194 - -0.8 966,228 + +1.8 966,236 - +2.1 966,238 + +0.6 966,238 + -0.5 966,238 + +0.2 966,238 + +1.0 966,238 + +1.0 966,238 + +1.1 966,238 + +1.5 966,238 + +1.4 966,238 + +0.6 966,238 + +1.0 966,238 + +0.2 966,238 + +0.5 966,246 - -0.2 966,246 - -2.6 966,246 - -0.3 966,246 - -0.1 966,246 - -1.1 966,246 - +0.1 966,254 + +0.8 966,254 + +0.7 966,254 + +1.1 966,262 - -0.4 966,262 - -0.5 966,262 - -1.8 966,262 - -0.7 966,269 + -0.3 966,277 - -0.9 966,277 - -1.3 966,279 - -0.6 966,279 - -1.5 966,336 - +0.0 966,344 - -1.3 966,349 - -0.8 966,349 - -1.3 966,349 - -0.3 966,368 + -1.0 966,376 + -1.3 966,386 - +1.3 966,396 + +0.7 966,396 + -0.0 966,454 - CCNA_00887 0.19 +0.3 966,466 - CCNA_00887 0.21 -1.5 966,479 + CCNA_00887 0.24 -1.1 966,512 + CCNA_00887 0.31 +1.1 966,532 + CCNA_00887 0.35 -0.1 966,539 - CCNA_00887 0.37 -1.5 966,609 + CCNA_00887 0.52 +0.5 966,635 - CCNA_00887 0.58 -0.1 966,657 + CCNA_00887 0.62 +0.4 966,690 + CCNA_00887 0.69 -1.8 966,698 - CCNA_00887 0.71 -0.9 966,698 - CCNA_00887 0.71 -0.7 966,704 - CCNA_00887 0.72 +0.3 966,726 + CCNA_00887 0.77 -0.3 966,737 + CCNA_00887 0.80 -0.7 966,763 + CCNA_00887 0.85 +0.3 966,853 + -0.4 966,853 + -1.0 966,853 + -2.5 966,854 + -2.1 966,861 - -1.4 966,862 - -0.5 966,862 - +0.1 966,862 - -0.8 966,862 - +1.8 966,862 - -0.2 966,862 - +0.8 966,862 - +0.4 966,862 - -1.4 966,877 + -0.9 966,877 + -0.3 966,877 + +0.1 966,877 + +0.5 966,885 - +1.4 966,885 - +1.0 966,885 - -2.4 966,910 + +1.4 966,944 - -0.9 966,946 + +0.2 966,954 - -2.3 966,959 + -0.1 967,021 - CCNA_00888 0.18 -1.4 967,022 + CCNA_00888 0.19 -0.6 967,022 + CCNA_00888 0.19 -0.2 967,024 + CCNA_00888 0.19 +0.4 967,030 - CCNA_00888 0.21 -1.3 967,032 - CCNA_00888 0.21 -0.1 967,053 + CCNA_00888 0.27 -0.4 967,066 - CCNA_00888 0.31 +0.1 967,101 + CCNA_00888 0.41 +0.4 967,138 + CCNA_00888 0.51 +0.8 967,154 - CCNA_00888 0.56 -0.3
Or see this region's nucleotide sequence