Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00865

Experiment: PYE with benzoic 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00863 and CCNA_00864 are separated by 124 nucleotidesCCNA_00864 and CCNA_00865 are separated by 5 nucleotidesCCNA_00865 and CCNA_00866 are separated by 16 nucleotides CCNA_00863: CCNA_00863 - xylonolactonase xylC, at 941,464 to 942,333 _00863 CCNA_00864: CCNA_00864 - D-xylose 1-dehydrogenase (EC 1.1.1.175) (from data), at 942,458 to 943,204 _00864 CCNA_00865: CCNA_00865 - alpha-ketoglutaric semialdehyde dehydrogenase xylA, at 943,210 to 944,646 _00865 CCNA_00866: CCNA_00866 - 2-keto-3-deoxyxylonate dehydratase XylX (EC 4.2.1.141) (from data), at 944,663 to 945,817 _00866 Position (kb) 943 944 945Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 942.237 kb on + strand, within CCNA_00863at 942.252 kb on + strandat 942.253 kb on + strandat 942.261 kb on - strandat 942.272 kb on - strandat 942.274 kb on + strandat 942.327 kb on - strandat 942.358 kb on + strandat 942.366 kb on - strandat 942.368 kb on + strandat 942.375 kb on + strandat 942.415 kb on - strandat 942.464 kb on - strandat 942.495 kb on + strandat 942.495 kb on + strandat 942.495 kb on + strandat 942.503 kb on - strandat 942.503 kb on - strandat 942.503 kb on - strandat 942.503 kb on - strandat 942.503 kb on - strandat 942.503 kb on - strandat 942.503 kb on - strandat 942.503 kb on - strandat 942.503 kb on - strandat 942.503 kb on - strandat 942.503 kb on - strandat 942.519 kb on + strandat 942.566 kb on - strand, within CCNA_00864at 942.571 kb on - strand, within CCNA_00864at 942.574 kb on - strand, within CCNA_00864at 942.595 kb on - strand, within CCNA_00864at 942.595 kb on - strand, within CCNA_00864at 942.596 kb on - strand, within CCNA_00864at 942.607 kb on - strand, within CCNA_00864at 942.623 kb on - strand, within CCNA_00864at 942.635 kb on - strand, within CCNA_00864at 942.641 kb on - strand, within CCNA_00864at 942.644 kb on + strand, within CCNA_00864at 942.644 kb on + strand, within CCNA_00864at 942.649 kb on + strand, within CCNA_00864at 942.652 kb on - strand, within CCNA_00864at 942.652 kb on - strand, within CCNA_00864at 942.652 kb on - strand, within CCNA_00864at 942.652 kb on - strand, within CCNA_00864at 942.687 kb on + strand, within CCNA_00864at 942.704 kb on + strand, within CCNA_00864at 942.750 kb on - strand, within CCNA_00864at 942.759 kb on - strand, within CCNA_00864at 942.837 kb on + strand, within CCNA_00864at 942.837 kb on + strand, within CCNA_00864at 942.845 kb on - strand, within CCNA_00864at 942.850 kb on - strand, within CCNA_00864at 942.859 kb on + strand, within CCNA_00864at 942.867 kb on - strand, within CCNA_00864at 942.867 kb on - strand, within CCNA_00864at 942.893 kb on + strand, within CCNA_00864at 942.983 kb on - strand, within CCNA_00864at 942.993 kb on - strand, within CCNA_00864at 943.000 kb on + strand, within CCNA_00864at 943.024 kb on + strand, within CCNA_00864at 943.046 kb on + strand, within CCNA_00864at 943.047 kb on + strand, within CCNA_00864at 943.056 kb on + strand, within CCNA_00864at 943.056 kb on + strand, within CCNA_00864at 943.056 kb on + strand, within CCNA_00864at 943.056 kb on + strand, within CCNA_00864at 943.057 kb on - strand, within CCNA_00864at 943.059 kb on - strand, within CCNA_00864at 943.064 kb on - strand, within CCNA_00864at 943.064 kb on - strand, within CCNA_00864at 943.064 kb on - strand, within CCNA_00864at 943.111 kb on - strand, within CCNA_00864at 943.126 kb on + strand, within CCNA_00864at 943.134 kb on - strandat 943.187 kb on + strandat 943.208 kb on + strandat 943.208 kb on + strandat 943.216 kb on - strandat 943.229 kb on + strandat 943.229 kb on - strandat 943.237 kb on - strandat 943.272 kb on - strandat 943.299 kb on - strandat 943.351 kb on + strandat 943.351 kb on + strandat 943.359 kb on - strand, within CCNA_00865at 943.450 kb on + strand, within CCNA_00865at 943.458 kb on - strand, within CCNA_00865at 943.458 kb on - strand, within CCNA_00865at 943.483 kb on + strand, within CCNA_00865at 943.506 kb on - strand, within CCNA_00865at 943.545 kb on - strandat 943.559 kb on - strand, within CCNA_00865at 943.559 kb on - strand, within CCNA_00865at 943.591 kb on - strand, within CCNA_00865at 943.608 kb on - strand, within CCNA_00865at 943.655 kb on + strand, within CCNA_00865at 943.690 kb on - strand, within CCNA_00865at 943.702 kb on + strand, within CCNA_00865at 943.702 kb on - strand, within CCNA_00865at 943.723 kb on - strand, within CCNA_00865at 943.802 kb on + strand, within CCNA_00865at 943.802 kb on + strand, within CCNA_00865at 943.802 kb on + strand, within CCNA_00865at 943.807 kb on + strand, within CCNA_00865at 943.834 kb on + strand, within CCNA_00865at 943.842 kb on - strand, within CCNA_00865at 943.856 kb on + strand, within CCNA_00865at 943.858 kb on + strand, within CCNA_00865at 943.863 kb on + strand, within CCNA_00865at 943.863 kb on + strand, within CCNA_00865at 943.868 kb on + strand, within CCNA_00865at 943.873 kb on + strand, within CCNA_00865at 943.876 kb on - strand, within CCNA_00865at 943.904 kb on + strand, within CCNA_00865at 943.921 kb on + strand, within CCNA_00865at 943.922 kb on - strand, within CCNA_00865at 943.926 kb on + strand, within CCNA_00865at 944.003 kb on + strand, within CCNA_00865at 944.003 kb on + strand, within CCNA_00865at 944.086 kb on - strand, within CCNA_00865at 944.126 kb on + strand, within CCNA_00865at 944.134 kb on - strand, within CCNA_00865at 944.134 kb on - strand, within CCNA_00865at 944.141 kb on + strand, within CCNA_00865at 944.205 kb on - strand, within CCNA_00865at 944.209 kb on + strand, within CCNA_00865at 944.212 kb on - strand, within CCNA_00865at 944.214 kb on + strand, within CCNA_00865at 944.214 kb on + strand, within CCNA_00865at 944.214 kb on + strand, within CCNA_00865at 944.222 kb on - strand, within CCNA_00865at 944.222 kb on - strand, within CCNA_00865at 944.222 kb on - strand, within CCNA_00865at 944.242 kb on + strand, within CCNA_00865at 944.243 kb on - strand, within CCNA_00865at 944.270 kb on + strand, within CCNA_00865at 944.270 kb on + strand, within CCNA_00865at 944.278 kb on + strand, within CCNA_00865at 944.293 kb on + strand, within CCNA_00865at 944.293 kb on + strand, within CCNA_00865at 944.298 kb on + strand, within CCNA_00865at 944.301 kb on - strand, within CCNA_00865at 944.301 kb on - strand, within CCNA_00865at 944.365 kb on + strand, within CCNA_00865at 944.374 kb on - strandat 944.408 kb on - strand, within CCNA_00865at 944.408 kb on - strand, within CCNA_00865at 944.427 kb on + strand, within CCNA_00865at 944.497 kb on - strand, within CCNA_00865at 944.519 kb on + strandat 944.527 kb on - strandat 944.536 kb on + strandat 944.558 kb on + strandat 944.574 kb on + strandat 944.574 kb on + strandat 944.636 kb on - strandat 944.669 kb on - strandat 944.698 kb on + strandat 944.701 kb on - strandat 944.706 kb on - strandat 944.730 kb on - strandat 944.816 kb on - strand, within CCNA_00866at 944.818 kb on + strand, within CCNA_00866at 944.842 kb on - strand, within CCNA_00866at 944.901 kb on + strand, within CCNA_00866at 944.901 kb on + strand, within CCNA_00866at 944.901 kb on + strand, within CCNA_00866at 944.901 kb on + strand, within CCNA_00866at 944.901 kb on + strand, within CCNA_00866at 944.909 kb on - strand, within CCNA_00866at 944.909 kb on - strand, within CCNA_00866at 944.909 kb on - strand, within CCNA_00866at 944.909 kb on - strand, within CCNA_00866at 944.909 kb on - strand, within CCNA_00866at 944.942 kb on - strand, within CCNA_00866at 944.957 kb on - strand, within CCNA_00866at 944.968 kb on + strand, within CCNA_00866at 944.981 kb on - strandat 945.086 kb on - strand, within CCNA_00866at 945.089 kb on - strand, within CCNA_00866at 945.101 kb on + strand, within CCNA_00866at 945.109 kb on - strand, within CCNA_00866at 945.136 kb on + strand, within CCNA_00866at 945.144 kb on - strand, within CCNA_00866at 945.149 kb on + strand, within CCNA_00866at 945.167 kb on + strand, within CCNA_00866at 945.167 kb on + strand, within CCNA_00866at 945.167 kb on + strand, within CCNA_00866at 945.172 kb on + strand, within CCNA_00866at 945.175 kb on - strand, within CCNA_00866at 945.175 kb on - strand, within CCNA_00866at 945.175 kb on - strand, within CCNA_00866at 945.175 kb on - strand, within CCNA_00866at 945.191 kb on + strand, within CCNA_00866at 945.237 kb on + strand, within CCNA_00866at 945.269 kb on - strand, within CCNA_00866at 945.271 kb on + strand, within CCNA_00866at 945.273 kb on + strand, within CCNA_00866at 945.318 kb on + strand, within CCNA_00866at 945.324 kb on - strand, within CCNA_00866at 945.404 kb on - strand, within CCNA_00866at 945.481 kb on - strand, within CCNA_00866at 945.494 kb on + strand, within CCNA_00866at 945.494 kb on + strand, within CCNA_00866at 945.494 kb on + strand, within CCNA_00866at 945.495 kb on - strand, within CCNA_00866at 945.517 kb on - strand, within CCNA_00866at 945.543 kb on + strand, within CCNA_00866at 945.548 kb on + strand, within CCNA_00866at 945.555 kb on + strand, within CCNA_00866at 945.565 kb on + strand, within CCNA_00866at 945.573 kb on + strand, within CCNA_00866at 945.578 kb on - strand, within CCNA_00866at 945.583 kb on - strand, within CCNA_00866at 945.583 kb on - strand, within CCNA_00866at 945.584 kb on + strand, within CCNA_00866at 945.585 kb on + strand, within CCNA_00866at 945.621 kb on + strand, within CCNA_00866at 945.621 kb on + strand, within CCNA_00866at 945.621 kb on + strand, within CCNA_00866at 945.621 kb on + strand, within CCNA_00866at 945.621 kb on + strand, within CCNA_00866at 945.629 kb on - strand, within CCNA_00866at 945.629 kb on - strand, within CCNA_00866at 945.629 kb on - strand, within CCNA_00866at 945.629 kb on - strand, within CCNA_00866at 945.629 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with benzoic 0.2 mg/ml
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942,237 + CCNA_00863 0.89 -0.4
942,252 + +0.8
942,253 + +0.2
942,261 - -0.6
942,272 - -0.8
942,274 + +0.6
942,327 - -1.1
942,358 + -0.2
942,366 - +0.4
942,368 + -0.1
942,375 + -0.7
942,415 - -0.0
942,464 - -1.8
942,495 + -0.2
942,495 + +1.4
942,495 + -2.0
942,503 - -3.2
942,503 - -0.1
942,503 - -1.4
942,503 - +0.2
942,503 - +1.7
942,503 - -0.6
942,503 - -1.3
942,503 - -0.4
942,503 - -0.4
942,503 - -0.1
942,503 - -2.0
942,519 + -1.7
942,566 - CCNA_00864 0.14 -0.6
942,571 - CCNA_00864 0.15 -1.0
942,574 - CCNA_00864 0.16 +0.8
942,595 - CCNA_00864 0.18 -0.4
942,595 - CCNA_00864 0.18 -1.6
942,596 - CCNA_00864 0.18 -0.9
942,607 - CCNA_00864 0.20 -2.0
942,623 - CCNA_00864 0.22 -1.7
942,635 - CCNA_00864 0.24 -1.4
942,641 - CCNA_00864 0.24 -1.2
942,644 + CCNA_00864 0.25 -0.0
942,644 + CCNA_00864 0.25 +1.4
942,649 + CCNA_00864 0.26 +0.4
942,652 - CCNA_00864 0.26 -1.1
942,652 - CCNA_00864 0.26 -0.5
942,652 - CCNA_00864 0.26 -1.5
942,652 - CCNA_00864 0.26 +1.4
942,687 + CCNA_00864 0.31 +0.4
942,704 + CCNA_00864 0.33 -1.8
942,750 - CCNA_00864 0.39 +0.5
942,759 - CCNA_00864 0.40 -0.8
942,837 + CCNA_00864 0.51 -1.1
942,837 + CCNA_00864 0.51 +1.6
942,845 - CCNA_00864 0.52 -0.1
942,850 - CCNA_00864 0.52 -1.1
942,859 + CCNA_00864 0.54 -0.6
942,867 - CCNA_00864 0.55 -1.1
942,867 - CCNA_00864 0.55 +0.8
942,893 + CCNA_00864 0.58 -3.2
942,983 - CCNA_00864 0.70 -2.9
942,993 - CCNA_00864 0.72 +0.6
943,000 + CCNA_00864 0.73 -0.3
943,024 + CCNA_00864 0.76 -1.8
943,046 + CCNA_00864 0.79 -2.6
943,047 + CCNA_00864 0.79 -0.1
943,056 + CCNA_00864 0.80 -0.1
943,056 + CCNA_00864 0.80 +0.1
943,056 + CCNA_00864 0.80 -0.5
943,056 + CCNA_00864 0.80 -0.0
943,057 - CCNA_00864 0.80 -0.3
943,059 - CCNA_00864 0.80 -0.4
943,064 - CCNA_00864 0.81 -0.1
943,064 - CCNA_00864 0.81 -1.6
943,064 - CCNA_00864 0.81 -0.8
943,111 - CCNA_00864 0.87 -1.8
943,126 + CCNA_00864 0.89 -0.3
943,134 - -0.2
943,187 + +0.6
943,208 + -0.9
943,208 + +0.6
943,216 - +0.1
943,229 + -0.1
943,229 - -1.0
943,237 - +0.0
943,272 - -0.5
943,299 - -1.0
943,351 + -0.2
943,351 + -1.8
943,359 - CCNA_00865 0.10 -2.4
943,450 + CCNA_00865 0.17 -0.5
943,458 - CCNA_00865 0.17 -0.8
943,458 - CCNA_00865 0.17 -0.5
943,483 + CCNA_00865 0.19 +1.0
943,506 - CCNA_00865 0.21 -2.3
943,545 - +1.4
943,559 - CCNA_00865 0.24 -0.9
943,559 - CCNA_00865 0.24 +0.3
943,591 - CCNA_00865 0.27 -1.3
943,608 - CCNA_00865 0.28 -0.6
943,655 + CCNA_00865 0.31 +0.4
943,690 - CCNA_00865 0.33 -0.5
943,702 + CCNA_00865 0.34 -1.4
943,702 - CCNA_00865 0.34 +1.3
943,723 - CCNA_00865 0.36 -0.4
943,802 + CCNA_00865 0.41 -0.5
943,802 + CCNA_00865 0.41 -0.1
943,802 + CCNA_00865 0.41 -1.6
943,807 + CCNA_00865 0.42 -2.5
943,834 + CCNA_00865 0.43 +0.9
943,842 - CCNA_00865 0.44 +0.4
943,856 + CCNA_00865 0.45 -1.8
943,858 + CCNA_00865 0.45 -1.7
943,863 + CCNA_00865 0.45 -0.0
943,863 + CCNA_00865 0.45 +2.4
943,868 + CCNA_00865 0.46 -0.9
943,873 + CCNA_00865 0.46 -0.2
943,876 - CCNA_00865 0.46 -0.8
943,904 + CCNA_00865 0.48 -0.9
943,921 + CCNA_00865 0.49 -1.3
943,922 - CCNA_00865 0.50 -2.6
943,926 + CCNA_00865 0.50 -0.6
944,003 + CCNA_00865 0.55 -1.7
944,003 + CCNA_00865 0.55 -0.2
944,086 - CCNA_00865 0.61 -0.7
944,126 + CCNA_00865 0.64 -0.8
944,134 - CCNA_00865 0.64 -0.1
944,134 - CCNA_00865 0.64 -0.7
944,141 + CCNA_00865 0.65 +1.1
944,205 - CCNA_00865 0.69 +0.6
944,209 + CCNA_00865 0.70 -0.6
944,212 - CCNA_00865 0.70 -1.9
944,214 + CCNA_00865 0.70 +0.4
944,214 + CCNA_00865 0.70 +0.5
944,214 + CCNA_00865 0.70 +0.7
944,222 - CCNA_00865 0.70 -0.7
944,222 - CCNA_00865 0.70 +0.9
944,222 - CCNA_00865 0.70 -0.3
944,242 + CCNA_00865 0.72 -1.6
944,243 - CCNA_00865 0.72 -1.5
944,270 + CCNA_00865 0.74 -0.5
944,270 + CCNA_00865 0.74 -1.7
944,278 + CCNA_00865 0.74 -0.9
944,293 + CCNA_00865 0.75 -1.3
944,293 + CCNA_00865 0.75 +0.1
944,298 + CCNA_00865 0.76 -2.7
944,301 - CCNA_00865 0.76 -1.5
944,301 - CCNA_00865 0.76 -0.6
944,365 + CCNA_00865 0.80 +2.4
944,374 - +0.6
944,408 - CCNA_00865 0.83 -0.4
944,408 - CCNA_00865 0.83 +0.2
944,427 + CCNA_00865 0.85 +0.3
944,497 - CCNA_00865 0.90 -0.2
944,519 + +0.1
944,527 - -1.3
944,536 + -1.1
944,558 + +0.8
944,574 + -0.2
944,574 + -0.5
944,636 - -2.2
944,669 - -2.0
944,698 + -1.0
944,701 - -0.8
944,706 - -0.6
944,730 - -1.7
944,816 - CCNA_00866 0.13 -2.0
944,818 + CCNA_00866 0.13 -2.0
944,842 - CCNA_00866 0.15 -0.7
944,901 + CCNA_00866 0.21 -2.2
944,901 + CCNA_00866 0.21 -0.4
944,901 + CCNA_00866 0.21 -1.1
944,901 + CCNA_00866 0.21 -2.6
944,901 + CCNA_00866 0.21 -0.4
944,909 - CCNA_00866 0.21 -2.1
944,909 - CCNA_00866 0.21 +0.2
944,909 - CCNA_00866 0.21 -0.8
944,909 - CCNA_00866 0.21 +4.4
944,909 - CCNA_00866 0.21 -0.6
944,942 - CCNA_00866 0.24 +0.2
944,957 - CCNA_00866 0.25 -0.3
944,968 + CCNA_00866 0.26 +1.9
944,981 - +0.6
945,086 - CCNA_00866 0.37 -0.3
945,089 - CCNA_00866 0.37 +0.4
945,101 + CCNA_00866 0.38 +0.1
945,109 - CCNA_00866 0.39 -0.8
945,136 + CCNA_00866 0.41 -0.1
945,144 - CCNA_00866 0.42 +0.1
945,149 + CCNA_00866 0.42 +1.1
945,167 + CCNA_00866 0.44 -0.1
945,167 + CCNA_00866 0.44 -0.1
945,167 + CCNA_00866 0.44 -0.8
945,172 + CCNA_00866 0.44 -0.0
945,175 - CCNA_00866 0.44 -1.2
945,175 - CCNA_00866 0.44 -2.0
945,175 - CCNA_00866 0.44 -0.2
945,175 - CCNA_00866 0.44 +0.8
945,191 + CCNA_00866 0.46 +0.4
945,237 + CCNA_00866 0.50 +0.0
945,269 - CCNA_00866 0.52 -1.0
945,271 + CCNA_00866 0.53 -1.0
945,273 + CCNA_00866 0.53 -1.7
945,318 + CCNA_00866 0.57 +0.4
945,324 - CCNA_00866 0.57 +0.4
945,404 - CCNA_00866 0.64 -2.5
945,481 - CCNA_00866 0.71 +1.7
945,494 + CCNA_00866 0.72 -1.1
945,494 + CCNA_00866 0.72 -1.8
945,494 + CCNA_00866 0.72 -1.7
945,495 - CCNA_00866 0.72 +0.8
945,517 - CCNA_00866 0.74 -2.1
945,543 + CCNA_00866 0.76 +0.6
945,548 + CCNA_00866 0.77 -0.9
945,555 + CCNA_00866 0.77 +0.8
945,565 + CCNA_00866 0.78 +2.2
945,573 + CCNA_00866 0.79 -1.3
945,578 - CCNA_00866 0.79 -0.1
945,583 - CCNA_00866 0.80 -2.7
945,583 - CCNA_00866 0.80 -2.2
945,584 + CCNA_00866 0.80 -0.9
945,585 + CCNA_00866 0.80 -0.6
945,621 + CCNA_00866 0.83 -0.4
945,621 + CCNA_00866 0.83 -2.3
945,621 + CCNA_00866 0.83 -0.5
945,621 + CCNA_00866 0.83 +0.1
945,621 + CCNA_00866 0.83 -1.9
945,629 - CCNA_00866 0.84 -0.3
945,629 - CCNA_00866 0.84 -0.1
945,629 - CCNA_00866 0.84 +0.7
945,629 - CCNA_00866 0.84 -2.7
945,629 - +1.4

Or see this region's nucleotide sequence