Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00596

Experiment: PYE with benzoic 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00595 and CCNA_00596 overlap by 43 nucleotidesCCNA_00596 and CCNA_00597 are separated by 158 nucleotides CCNA_00595: CCNA_00595 - FecR family protein, at 626,899 to 627,888 _00595 CCNA_00596: CCNA_00596 - RpoE-family sigma factor, at 627,846 to 628,364 _00596 CCNA_00597: CCNA_00597 - TonB-dependent receptor, at 628,523 to 631,663 _00597 Position (kb) 627 628 629Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 626.858 kb on + strandat 626.858 kb on + strandat 626.858 kb on + strandat 626.858 kb on + strandat 626.858 kb on + strandat 626.858 kb on + strandat 626.866 kb on - strandat 626.866 kb on - strandat 626.893 kb on - strandat 626.894 kb on + strandat 626.895 kb on + strandat 626.934 kb on - strandat 626.948 kb on - strandat 626.986 kb on + strandat 627.004 kb on + strand, within CCNA_00595at 627.005 kb on - strand, within CCNA_00595at 627.012 kb on + strand, within CCNA_00595at 627.022 kb on + strand, within CCNA_00595at 627.044 kb on - strand, within CCNA_00595at 627.051 kb on - strand, within CCNA_00595at 627.051 kb on - strand, within CCNA_00595at 627.051 kb on - strand, within CCNA_00595at 627.052 kb on - strand, within CCNA_00595at 627.101 kb on - strand, within CCNA_00595at 627.103 kb on + strand, within CCNA_00595at 627.103 kb on + strand, within CCNA_00595at 627.103 kb on + strand, within CCNA_00595at 627.111 kb on - strand, within CCNA_00595at 627.111 kb on - strand, within CCNA_00595at 627.111 kb on - strand, within CCNA_00595at 627.141 kb on - strand, within CCNA_00595at 627.196 kb on + strand, within CCNA_00595at 627.196 kb on + strand, within CCNA_00595at 627.196 kb on + strand, within CCNA_00595at 627.199 kb on - strand, within CCNA_00595at 627.204 kb on - strand, within CCNA_00595at 627.204 kb on - strand, within CCNA_00595at 627.204 kb on - strand, within CCNA_00595at 627.206 kb on + strand, within CCNA_00595at 627.213 kb on + strand, within CCNA_00595at 627.214 kb on - strand, within CCNA_00595at 627.214 kb on - strand, within CCNA_00595at 627.221 kb on - strand, within CCNA_00595at 627.238 kb on + strand, within CCNA_00595at 627.303 kb on - strand, within CCNA_00595at 627.308 kb on - strand, within CCNA_00595at 627.309 kb on - strand, within CCNA_00595at 627.320 kb on + strand, within CCNA_00595at 627.328 kb on - strand, within CCNA_00595at 627.328 kb on - strand, within CCNA_00595at 627.328 kb on - strand, within CCNA_00595at 627.364 kb on - strand, within CCNA_00595at 627.380 kb on + strand, within CCNA_00595at 627.380 kb on + strand, within CCNA_00595at 627.388 kb on - strand, within CCNA_00595at 627.388 kb on - strand, within CCNA_00595at 627.388 kb on - strand, within CCNA_00595at 627.388 kb on - strand, within CCNA_00595at 627.468 kb on - strand, within CCNA_00595at 627.550 kb on + strand, within CCNA_00595at 627.606 kb on - strand, within CCNA_00595at 627.627 kb on - strand, within CCNA_00595at 627.656 kb on - strand, within CCNA_00595at 627.734 kb on + strand, within CCNA_00595at 627.737 kb on - strand, within CCNA_00595at 627.742 kb on - strand, within CCNA_00595at 627.742 kb on - strand, within CCNA_00595at 627.742 kb on - strand, within CCNA_00595at 627.767 kb on + strand, within CCNA_00595at 627.769 kb on - strand, within CCNA_00595at 627.803 kb on - strandat 627.809 kb on + strandat 627.817 kb on - strandat 627.851 kb on + strandat 627.859 kb on - strandat 627.868 kb on + strandat 627.876 kb on - strandat 627.876 kb on - strandat 627.876 kb on - strandat 627.880 kb on + strandat 627.899 kb on - strand, within CCNA_00596at 627.912 kb on + strand, within CCNA_00596at 627.920 kb on - strand, within CCNA_00596at 627.920 kb on - strand, within CCNA_00596at 627.968 kb on - strand, within CCNA_00596at 627.971 kb on + strand, within CCNA_00596at 627.981 kb on - strand, within CCNA_00596at 628.014 kb on - strand, within CCNA_00596at 628.024 kb on - strand, within CCNA_00596at 628.024 kb on - strand, within CCNA_00596at 628.024 kb on - strand, within CCNA_00596at 628.024 kb on - strand, within CCNA_00596at 628.109 kb on + strand, within CCNA_00596at 628.117 kb on - strand, within CCNA_00596at 628.177 kb on + strand, within CCNA_00596at 628.177 kb on + strand, within CCNA_00596at 628.177 kb on + strand, within CCNA_00596at 628.185 kb on - strand, within CCNA_00596at 628.185 kb on - strand, within CCNA_00596at 628.185 kb on - strand, within CCNA_00596at 628.185 kb on - strand, within CCNA_00596at 628.187 kb on - strand, within CCNA_00596at 628.193 kb on - strand, within CCNA_00596at 628.248 kb on + strand, within CCNA_00596at 628.257 kb on - strand, within CCNA_00596at 628.257 kb on - strand, within CCNA_00596at 628.288 kb on - strand, within CCNA_00596at 628.298 kb on - strand, within CCNA_00596at 628.298 kb on - strand, within CCNA_00596at 628.390 kb on + strandat 628.390 kb on + strandat 628.393 kb on - strandat 628.405 kb on - strandat 628.439 kb on - strandat 628.446 kb on + strandat 628.451 kb on + strandat 628.454 kb on - strandat 628.454 kb on - strandat 628.459 kb on - strandat 628.459 kb on - strandat 628.459 kb on - strandat 628.476 kb on + strandat 628.476 kb on + strandat 628.481 kb on + strandat 628.510 kb on - strandat 628.511 kb on - strandat 628.520 kb on + strandat 628.528 kb on - strandat 628.566 kb on - strandat 628.597 kb on - strandat 628.608 kb on - strandat 628.646 kb on - strandat 628.659 kb on + strandat 628.660 kb on - strandat 628.667 kb on - strandat 628.671 kb on + strandat 628.672 kb on - strandat 628.672 kb on - strandat 628.672 kb on - strandat 628.679 kb on - strandat 628.679 kb on - strandat 628.682 kb on + strandat 628.742 kb on + strandat 628.793 kb on + strandat 628.870 kb on + strand, within CCNA_00597at 628.894 kb on - strand, within CCNA_00597at 628.906 kb on - strand, within CCNA_00597at 628.916 kb on - strand, within CCNA_00597at 628.931 kb on + strand, within CCNA_00597at 628.956 kb on - strand, within CCNA_00597at 628.980 kb on + strand, within CCNA_00597at 628.980 kb on + strand, within CCNA_00597at 628.997 kb on + strand, within CCNA_00597at 629.043 kb on - strand, within CCNA_00597at 629.118 kb on + strand, within CCNA_00597at 629.123 kb on + strandat 629.123 kb on + strand, within CCNA_00597at 629.123 kb on + strand, within CCNA_00597at 629.126 kb on - strand, within CCNA_00597at 629.131 kb on - strand, within CCNA_00597at 629.131 kb on - strand, within CCNA_00597at 629.131 kb on - strand, within CCNA_00597at 629.131 kb on - strand, within CCNA_00597at 629.131 kb on - strand, within CCNA_00597at 629.197 kb on + strand, within CCNA_00597at 629.226 kb on + strand, within CCNA_00597at 629.228 kb on - strand, within CCNA_00597at 629.238 kb on - strand, within CCNA_00597at 629.248 kb on + strand, within CCNA_00597at 629.256 kb on - strand, within CCNA_00597at 629.257 kb on - strand, within CCNA_00597at 629.274 kb on + strand, within CCNA_00597at 629.274 kb on + strand, within CCNA_00597at 629.274 kb on + strand, within CCNA_00597at 629.281 kb on + strand, within CCNA_00597at 629.282 kb on - strand, within CCNA_00597at 629.282 kb on - strand, within CCNA_00597at 629.284 kb on + strand, within CCNA_00597at 629.307 kb on + strand, within CCNA_00597at 629.316 kb on + strand, within CCNA_00597at 629.318 kb on + strand, within CCNA_00597at 629.326 kb on - strand, within CCNA_00597at 629.342 kb on + strand, within CCNA_00597at 629.342 kb on + strand, within CCNA_00597at 629.342 kb on + strand, within CCNA_00597at 629.350 kb on - strand, within CCNA_00597

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with benzoic 0.2 mg/ml
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626,858 + -1.8
626,858 + -0.9
626,858 + -2.0
626,858 + +1.5
626,858 + +0.2
626,858 + -0.7
626,866 - +0.7
626,866 - -2.6
626,893 - -0.5
626,894 + -2.7
626,895 + -0.7
626,934 - +0.6
626,948 - +1.2
626,986 + -1.7
627,004 + CCNA_00595 0.11 -0.9
627,005 - CCNA_00595 0.11 +1.2
627,012 + CCNA_00595 0.11 +1.2
627,022 + CCNA_00595 0.12 -2.3
627,044 - CCNA_00595 0.15 -0.2
627,051 - CCNA_00595 0.15 +0.0
627,051 - CCNA_00595 0.15 -1.5
627,051 - CCNA_00595 0.15 +0.0
627,052 - CCNA_00595 0.15 -0.8
627,101 - CCNA_00595 0.20 +2.7
627,103 + CCNA_00595 0.21 -2.6
627,103 + CCNA_00595 0.21 +0.7
627,103 + CCNA_00595 0.21 +0.3
627,111 - CCNA_00595 0.21 -0.9
627,111 - CCNA_00595 0.21 +1.2
627,111 - CCNA_00595 0.21 +1.0
627,141 - CCNA_00595 0.24 +1.0
627,196 + CCNA_00595 0.30 -0.5
627,196 + CCNA_00595 0.30 -0.5
627,196 + CCNA_00595 0.30 +0.1
627,199 - CCNA_00595 0.30 +0.2
627,204 - CCNA_00595 0.31 -1.2
627,204 - CCNA_00595 0.31 +0.8
627,204 - CCNA_00595 0.31 +0.7
627,206 + CCNA_00595 0.31 +0.7
627,213 + CCNA_00595 0.32 -1.2
627,214 - CCNA_00595 0.32 +1.2
627,214 - CCNA_00595 0.32 +1.6
627,221 - CCNA_00595 0.33 +1.2
627,238 + CCNA_00595 0.34 +0.4
627,303 - CCNA_00595 0.41 +0.9
627,308 - CCNA_00595 0.41 +0.2
627,309 - CCNA_00595 0.41 -0.4
627,320 + CCNA_00595 0.43 +0.5
627,328 - CCNA_00595 0.43 -0.3
627,328 - CCNA_00595 0.43 -1.2
627,328 - CCNA_00595 0.43 -0.7
627,364 - CCNA_00595 0.47 +0.5
627,380 + CCNA_00595 0.49 -0.5
627,380 + CCNA_00595 0.49 -0.3
627,388 - CCNA_00595 0.49 -0.2
627,388 - CCNA_00595 0.49 -2.6
627,388 - CCNA_00595 0.49 -0.5
627,388 - CCNA_00595 0.49 +0.1
627,468 - CCNA_00595 0.57 -1.7
627,550 + CCNA_00595 0.66 -1.7
627,606 - CCNA_00595 0.71 +1.1
627,627 - CCNA_00595 0.74 -1.8
627,656 - CCNA_00595 0.76 -1.3
627,734 + CCNA_00595 0.84 -0.5
627,737 - CCNA_00595 0.85 -0.9
627,742 - CCNA_00595 0.85 +0.7
627,742 - CCNA_00595 0.85 +0.9
627,742 - CCNA_00595 0.85 -0.4
627,767 + CCNA_00595 0.88 +1.7
627,769 - CCNA_00595 0.88 -0.5
627,803 - -0.8
627,809 + +0.9
627,817 - -0.6
627,851 + +0.2
627,859 - +0.0
627,868 + -0.8
627,876 - -0.7
627,876 - -0.6
627,876 - -0.9
627,880 + -1.5
627,899 - CCNA_00596 0.10 -1.0
627,912 + CCNA_00596 0.13 -0.4
627,920 - CCNA_00596 0.14 +0.5
627,920 - CCNA_00596 0.14 +0.5
627,968 - CCNA_00596 0.24 +0.9
627,971 + CCNA_00596 0.24 -0.6
627,981 - CCNA_00596 0.26 -0.6
628,014 - CCNA_00596 0.32 -0.2
628,024 - CCNA_00596 0.34 -0.2
628,024 - CCNA_00596 0.34 -0.2
628,024 - CCNA_00596 0.34 -0.7
628,024 - CCNA_00596 0.34 -0.2
628,109 + CCNA_00596 0.51 +0.1
628,117 - CCNA_00596 0.52 +0.7
628,177 + CCNA_00596 0.64 -0.8
628,177 + CCNA_00596 0.64 -0.1
628,177 + CCNA_00596 0.64 -0.3
628,185 - CCNA_00596 0.65 -1.8
628,185 - CCNA_00596 0.65 -2.5
628,185 - CCNA_00596 0.65 +0.7
628,185 - CCNA_00596 0.65 -0.2
628,187 - CCNA_00596 0.66 +0.4
628,193 - CCNA_00596 0.67 -1.4
628,248 + CCNA_00596 0.77 -1.5
628,257 - CCNA_00596 0.79 +0.2
628,257 - CCNA_00596 0.79 +0.0
628,288 - CCNA_00596 0.85 -1.4
628,298 - CCNA_00596 0.87 -1.2
628,298 - CCNA_00596 0.87 -0.8
628,390 + -1.1
628,390 + +0.1
628,393 - -0.0
628,405 - -0.1
628,439 - -1.5
628,446 + +0.9
628,451 + -0.9
628,454 - -0.2
628,454 - -3.4
628,459 - -1.3
628,459 - +0.9
628,459 - -0.3
628,476 + -2.0
628,476 + -1.5
628,481 + +0.1
628,510 - -0.4
628,511 - +0.0
628,520 + -1.7
628,528 - -0.2
628,566 - +0.4
628,597 - -1.1
628,608 - +1.0
628,646 - -0.2
628,659 + +1.7
628,660 - -0.3
628,667 - -0.8
628,671 + +0.2
628,672 - -1.1
628,672 - -0.9
628,672 - -1.4
628,679 - +0.1
628,679 - +1.1
628,682 + -2.0
628,742 + +0.9
628,793 + +0.9
628,870 + CCNA_00597 0.11 -0.1
628,894 - CCNA_00597 0.12 +0.1
628,906 - CCNA_00597 0.12 +3.5
628,916 - CCNA_00597 0.13 +0.2
628,931 + CCNA_00597 0.13 -1.2
628,956 - CCNA_00597 0.14 -0.8
628,980 + CCNA_00597 0.15 +0.1
628,980 + CCNA_00597 0.15 -1.3
628,997 + CCNA_00597 0.15 +0.5
629,043 - CCNA_00597 0.17 -0.4
629,118 + CCNA_00597 0.19 -0.8
629,123 + +2.1
629,123 + CCNA_00597 0.19 -0.5
629,123 + CCNA_00597 0.19 -1.0
629,126 - CCNA_00597 0.19 +0.1
629,131 - CCNA_00597 0.19 -0.4
629,131 - CCNA_00597 0.19 +0.9
629,131 - CCNA_00597 0.19 -0.7
629,131 - CCNA_00597 0.19 -0.3
629,131 - CCNA_00597 0.19 +1.7
629,197 + CCNA_00597 0.21 -1.1
629,226 + CCNA_00597 0.22 -0.9
629,228 - CCNA_00597 0.22 -0.1
629,238 - CCNA_00597 0.23 +0.7
629,248 + CCNA_00597 0.23 +0.1
629,256 - CCNA_00597 0.23 -1.8
629,257 - CCNA_00597 0.23 +0.2
629,274 + CCNA_00597 0.24 -0.1
629,274 + CCNA_00597 0.24 +0.0
629,274 + CCNA_00597 0.24 +0.6
629,281 + CCNA_00597 0.24 -0.6
629,282 - CCNA_00597 0.24 -0.1
629,282 - CCNA_00597 0.24 +0.6
629,284 + CCNA_00597 0.24 -0.1
629,307 + CCNA_00597 0.25 +0.9
629,316 + CCNA_00597 0.25 +0.9
629,318 + CCNA_00597 0.25 +0.4
629,326 - CCNA_00597 0.26 -1.3
629,342 + CCNA_00597 0.26 -0.9
629,342 + CCNA_00597 0.26 +1.7
629,342 + CCNA_00597 0.26 +1.7
629,350 - CCNA_00597 0.26 -0.5

Or see this region's nucleotide sequence