Experiment: Fusidic 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_958 and Ac3H11_959 are separated by 128 nucleotides Ac3H11_959 and Ac3H11_960 are separated by 965 nucleotides
Ac3H11_958 - Permease of the drug/metabolite transporter (DMT) superfamily, at 79,382 to 80,344
_958
Ac3H11_959 - Transcriptional regulator, LysR family, at 80,473 to 81,390
_959
Ac3H11_960 - Transcriptional regulator, GntR family, at 82,356 to 83,024
_960
Position (kb)
80
81
82 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 79.647 kb on + strand, within Ac3H11_958 at 79.647 kb on + strand, within Ac3H11_958 at 79.647 kb on + strand, within Ac3H11_958 at 79.647 kb on + strand, within Ac3H11_958 at 79.647 kb on + strand, within Ac3H11_958 at 79.648 kb on - strand, within Ac3H11_958 at 79.648 kb on - strand, within Ac3H11_958 at 79.896 kb on + strand, within Ac3H11_958 at 80.217 kb on + strand, within Ac3H11_958 at 80.218 kb on - strand, within Ac3H11_958 at 80.247 kb on + strand, within Ac3H11_958 at 80.247 kb on + strand, within Ac3H11_958 at 80.247 kb on + strand, within Ac3H11_958 at 80.247 kb on + strand, within Ac3H11_958 at 80.248 kb on - strand at 80.248 kb on - strand at 80.248 kb on - strand at 80.248 kb on - strand at 80.421 kb on + strand at 80.687 kb on - strand, within Ac3H11_959 at 80.687 kb on - strand, within Ac3H11_959 at 80.687 kb on - strand, within Ac3H11_959 at 80.842 kb on + strand, within Ac3H11_959 at 80.843 kb on - strand, within Ac3H11_959 at 81.001 kb on + strand, within Ac3H11_959 at 81.001 kb on + strand, within Ac3H11_959 at 81.001 kb on + strand, within Ac3H11_959 at 81.002 kb on - strand, within Ac3H11_959 at 81.002 kb on - strand, within Ac3H11_959 at 81.142 kb on + strand, within Ac3H11_959 at 81.142 kb on + strand, within Ac3H11_959 at 81.143 kb on - strand, within Ac3H11_959 at 81.143 kb on - strand, within Ac3H11_959 at 81.286 kb on + strand, within Ac3H11_959 at 81.286 kb on + strand, within Ac3H11_959 at 81.286 kb on + strand, within Ac3H11_959 at 81.286 kb on + strand, within Ac3H11_959 at 81.286 kb on + strand, within Ac3H11_959 at 81.286 kb on + strand, within Ac3H11_959 at 81.286 kb on + strand, within Ac3H11_959 at 81.286 kb on + strand, within Ac3H11_959 at 81.287 kb on - strand, within Ac3H11_959 at 81.287 kb on - strand, within Ac3H11_959 at 81.287 kb on - strand, within Ac3H11_959 at 81.287 kb on - strand, within Ac3H11_959 at 81.287 kb on - strand, within Ac3H11_959 at 81.287 kb on - strand, within Ac3H11_959 at 81.310 kb on + strand at 81.388 kb on + strand at 81.388 kb on + strand at 81.388 kb on + strand at 81.389 kb on - strand at 81.389 kb on - strand at 81.389 kb on - strand at 81.439 kb on + strand at 81.439 kb on + strand at 81.502 kb on + strand at 81.502 kb on + strand at 81.502 kb on + strand at 81.502 kb on + strand at 81.502 kb on + strand at 81.502 kb on + strand at 81.503 kb on - strand at 81.503 kb on - strand at 81.631 kb on + strand at 81.632 kb on - strand at 81.632 kb on - strand at 81.632 kb on - strand at 81.632 kb on - strand at 81.681 kb on + strand at 81.681 kb on + strand at 81.681 kb on + strand at 81.681 kb on + strand at 81.681 kb on + strand at 81.682 kb on - strand at 81.682 kb on - strand at 81.682 kb on - strand at 81.816 kb on + strand at 81.816 kb on + strand at 81.816 kb on + strand at 81.816 kb on + strand at 81.816 kb on + strand at 81.816 kb on + strand at 81.816 kb on + strand at 81.816 kb on + strand at 81.816 kb on + strand at 81.816 kb on + strand at 81.816 kb on + strand at 81.816 kb on + strand at 81.816 kb on + strand at 81.816 kb on + strand at 81.816 kb on + strand at 81.816 kb on + strand at 81.816 kb on + strand at 81.816 kb on + strand at 81.816 kb on + strand at 81.816 kb on + strand at 81.816 kb on + strand at 81.816 kb on + strand at 81.816 kb on + strand at 81.816 kb on + strand at 81.816 kb on + strand at 81.817 kb on - strand at 81.817 kb on - strand at 81.817 kb on - strand at 81.817 kb on - strand at 81.817 kb on - strand at 81.817 kb on - strand at 81.817 kb on - strand at 81.817 kb on - strand at 81.817 kb on - strand at 81.817 kb on - strand at 81.817 kb on - strand at 81.817 kb on - strand at 81.817 kb on - strand at 81.817 kb on - strand at 81.817 kb on - strand at 81.817 kb on - strand at 81.817 kb on - strand at 81.817 kb on - strand at 81.817 kb on - strand at 81.817 kb on - strand at 81.866 kb on + strand at 81.866 kb on + strand at 81.867 kb on - strand at 81.867 kb on - strand at 81.883 kb on + strand at 81.918 kb on + strand at 81.918 kb on + strand at 81.918 kb on + strand at 81.918 kb on + strand at 81.918 kb on + strand at 81.918 kb on + strand at 81.918 kb on + strand at 81.919 kb on - strand at 81.919 kb on - strand at 82.155 kb on + strand at 82.164 kb on + strand at 82.168 kb on + strand at 82.178 kb on + strand at 82.217 kb on + strand at 82.217 kb on + strand at 82.217 kb on + strand at 82.217 kb on + strand at 82.218 kb on - strand at 82.237 kb on + strand at 82.238 kb on - strand at 82.238 kb on - strand at 82.286 kb on + strand at 82.286 kb on + strand at 82.286 kb on + strand at 82.286 kb on + strand at 82.287 kb on - strand at 82.318 kb on + strand at 82.318 kb on + strand at 82.352 kb on + strand at 82.352 kb on + strand at 82.352 kb on + strand at 82.353 kb on - strand at 82.353 kb on - strand at 82.353 kb on - strand at 82.353 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.001 mg/ml remove 79,647 + Ac3H11_958 0.28 -0.4 79,647 + Ac3H11_958 0.28 +0.8 79,647 + Ac3H11_958 0.28 -0.2 79,647 + Ac3H11_958 0.28 -0.8 79,647 + Ac3H11_958 0.28 -0.2 79,648 - Ac3H11_958 0.28 +0.1 79,648 - Ac3H11_958 0.28 -0.6 79,896 + Ac3H11_958 0.53 -0.1 80,217 + Ac3H11_958 0.87 +0.3 80,218 - Ac3H11_958 0.87 +1.3 80,247 + Ac3H11_958 0.90 -0.8 80,247 + Ac3H11_958 0.90 +0.8 80,247 + Ac3H11_958 0.90 +1.5 80,247 + Ac3H11_958 0.90 -0.7 80,248 - +1.1 80,248 - -0.7 80,248 - +1.1 80,248 - +0.7 80,421 + +1.8 80,687 - Ac3H11_959 0.23 -0.7 80,687 - Ac3H11_959 0.23 -0.2 80,687 - Ac3H11_959 0.23 -0.9 80,842 + Ac3H11_959 0.40 +2.0 80,843 - Ac3H11_959 0.40 +1.0 81,001 + Ac3H11_959 0.58 +0.9 81,001 + Ac3H11_959 0.58 -0.2 81,001 + Ac3H11_959 0.58 -0.4 81,002 - Ac3H11_959 0.58 +0.8 81,002 - Ac3H11_959 0.58 -0.4 81,142 + Ac3H11_959 0.73 -1.4 81,142 + Ac3H11_959 0.73 -0.4 81,143 - Ac3H11_959 0.73 +0.1 81,143 - Ac3H11_959 0.73 -3.9 81,286 + Ac3H11_959 0.89 +0.0 81,286 + Ac3H11_959 0.89 -0.5 81,286 + Ac3H11_959 0.89 -0.1 81,286 + Ac3H11_959 0.89 +0.4 81,286 + Ac3H11_959 0.89 -1.5 81,286 + Ac3H11_959 0.89 +0.5 81,286 + Ac3H11_959 0.89 -1.2 81,286 + Ac3H11_959 0.89 -0.9 81,287 - Ac3H11_959 0.89 -1.2 81,287 - Ac3H11_959 0.89 +0.4 81,287 - Ac3H11_959 0.89 -0.8 81,287 - Ac3H11_959 0.89 -1.1 81,287 - Ac3H11_959 0.89 -1.8 81,287 - Ac3H11_959 0.89 -0.7 81,310 + +0.8 81,388 + -0.0 81,388 + +0.2 81,388 + -0.4 81,389 - -0.7 81,389 - +0.0 81,389 - -1.2 81,439 + -0.2 81,439 + -0.7 81,502 + +0.4 81,502 + +0.4 81,502 + -1.4 81,502 + -1.5 81,502 + +0.5 81,502 + +0.3 81,503 - +0.8 81,503 - +0.8 81,631 + +0.5 81,632 - -0.7 81,632 - -0.7 81,632 - -0.4 81,632 - -0.5 81,681 + -0.8 81,681 + +0.5 81,681 + +0.2 81,681 + +0.4 81,681 + +0.5 81,682 - -0.1 81,682 - -1.1 81,682 - +0.4 81,816 + -0.3 81,816 + +0.8 81,816 + -0.6 81,816 + -0.5 81,816 + -0.8 81,816 + -1.1 81,816 + -0.7 81,816 + +0.8 81,816 + +0.1 81,816 + -0.1 81,816 + -0.5 81,816 + +0.2 81,816 + +0.2 81,816 + +0.3 81,816 + +1.6 81,816 + +1.5 81,816 + -0.1 81,816 + +0.5 81,816 + -0.5 81,816 + +0.3 81,816 + -0.2 81,816 + +0.3 81,816 + +1.6 81,816 + +0.5 81,816 + -0.1 81,817 - +0.9 81,817 - +0.3 81,817 - +0.7 81,817 - -2.6 81,817 - +1.1 81,817 - -0.0 81,817 - +0.4 81,817 - -0.5 81,817 - +1.2 81,817 - -1.0 81,817 - -0.0 81,817 - +0.4 81,817 - -0.5 81,817 - +0.5 81,817 - +0.7 81,817 - -2.3 81,817 - +0.3 81,817 - -1.1 81,817 - -0.3 81,817 - +1.0 81,866 + -1.2 81,866 + -1.8 81,867 - -1.7 81,867 - +0.4 81,883 + +0.3 81,918 + +1.7 81,918 + -0.2 81,918 + -2.3 81,918 + -0.7 81,918 + +0.5 81,918 + +0.0 81,918 + +0.1 81,919 - -0.1 81,919 - -1.5 82,155 + +0.1 82,164 + +0.5 82,168 + -1.6 82,178 + -0.0 82,217 + -1.8 82,217 + +0.4 82,217 + -0.4 82,217 + -0.5 82,218 - -0.3 82,237 + -0.7 82,238 - +0.4 82,238 - -1.0 82,286 + -0.5 82,286 + +1.2 82,286 + +0.1 82,286 + -0.0 82,287 - -0.5 82,318 + +0.3 82,318 + +0.5 82,352 + -0.3 82,352 + +0.1 82,352 + +1.2 82,353 - +0.5 82,353 - +0.1 82,353 - -0.6 82,353 - -0.7
Or see this region's nucleotide sequence