Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_510

Experiment: Fusidic 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_509 and Ac3H11_510 are separated by 316 nucleotidesAc3H11_510 and Ac3H11_511 are separated by 131 nucleotides Ac3H11_509 - Inorganic pyrophosphatase (EC 3.6.1.1), at 207,160 to 207,696 _509 Ac3H11_510 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 208,013 to 210,037 _510 Ac3H11_511 - FIG00933650: hypothetical protein, at 210,169 to 210,975 _511 Position (kb) 208 209 210 211Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 207.014 kb on + strandat 207.042 kb on + strandat 207.042 kb on + strandat 207.149 kb on + strandat 207.783 kb on + strandat 207.905 kb on - strandat 208.010 kb on + strandat 208.010 kb on + strandat 208.010 kb on + strandat 208.010 kb on + strandat 208.010 kb on + strandat 208.010 kb on + strandat 208.010 kb on + strandat 208.010 kb on + strandat 208.011 kb on - strandat 208.011 kb on - strandat 208.011 kb on - strandat 208.011 kb on - strandat 208.011 kb on - strandat 208.011 kb on - strandat 208.196 kb on + strandat 208.196 kb on + strandat 208.196 kb on + strandat 208.196 kb on + strandat 208.197 kb on - strandat 208.197 kb on - strandat 208.197 kb on - strandat 208.197 kb on - strandat 208.317 kb on - strand, within Ac3H11_510at 208.317 kb on - strand, within Ac3H11_510at 208.364 kb on + strand, within Ac3H11_510at 208.365 kb on - strand, within Ac3H11_510at 208.385 kb on + strand, within Ac3H11_510at 208.385 kb on + strand, within Ac3H11_510at 208.484 kb on + strand, within Ac3H11_510at 208.484 kb on + strand, within Ac3H11_510at 208.484 kb on + strand, within Ac3H11_510at 208.484 kb on + strand, within Ac3H11_510at 208.484 kb on + strand, within Ac3H11_510at 208.484 kb on + strand, within Ac3H11_510at 208.485 kb on - strand, within Ac3H11_510at 208.485 kb on - strand, within Ac3H11_510at 208.485 kb on - strand, within Ac3H11_510at 208.485 kb on - strand, within Ac3H11_510at 209.622 kb on - strand, within Ac3H11_510at 209.622 kb on - strand, within Ac3H11_510at 210.154 kb on + strandat 210.155 kb on - strandat 210.155 kb on - strandat 210.189 kb on - strandat 210.238 kb on + strandat 210.238 kb on + strandat 210.238 kb on + strandat 210.239 kb on - strandat 210.417 kb on + strand, within Ac3H11_511at 210.417 kb on + strand, within Ac3H11_511at 210.418 kb on - strand, within Ac3H11_511at 210.418 kb on - strand, within Ac3H11_511at 210.418 kb on - strand, within Ac3H11_511at 210.452 kb on + strand, within Ac3H11_511at 210.452 kb on + strand, within Ac3H11_511at 210.452 kb on + strand, within Ac3H11_511at 210.453 kb on - strand, within Ac3H11_511at 210.453 kb on - strand, within Ac3H11_511at 210.453 kb on - strand, within Ac3H11_511at 210.453 kb on - strand, within Ac3H11_511at 210.453 kb on - strand, within Ac3H11_511at 210.453 kb on - strand, within Ac3H11_511at 210.453 kb on - strand, within Ac3H11_511at 210.497 kb on + strand, within Ac3H11_511at 210.543 kb on + strand, within Ac3H11_511at 210.602 kb on + strand, within Ac3H11_511at 210.602 kb on + strand, within Ac3H11_511at 210.602 kb on + strand, within Ac3H11_511at 210.602 kb on + strand, within Ac3H11_511at 210.603 kb on - strand, within Ac3H11_511at 210.743 kb on + strand, within Ac3H11_511at 210.743 kb on + strand, within Ac3H11_511at 210.743 kb on + strand, within Ac3H11_511at 210.743 kb on + strand, within Ac3H11_511at 210.743 kb on + strand, within Ac3H11_511at 210.744 kb on - strand, within Ac3H11_511at 210.744 kb on - strand, within Ac3H11_511at 210.744 kb on - strand, within Ac3H11_511at 210.744 kb on - strand, within Ac3H11_511at 210.744 kb on - strand, within Ac3H11_511at 210.744 kb on - strand, within Ac3H11_511

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.001 mg/ml
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207,014 + +0.1
207,042 + +0.4
207,042 + -0.1
207,149 + -1.9
207,783 + +1.2
207,905 - +0.3
208,010 + -0.4
208,010 + -2.8
208,010 + +2.5
208,010 + +0.7
208,010 + +0.8
208,010 + +1.2
208,010 + -0.5
208,010 + -0.2
208,011 - +0.0
208,011 - +0.3
208,011 - -0.3
208,011 - -2.4
208,011 - +1.0
208,011 - -0.0
208,196 + +0.3
208,196 + +0.0
208,196 + +0.1
208,196 + +0.9
208,197 - +1.0
208,197 - +0.8
208,197 - -1.9
208,197 - -0.7
208,317 - Ac3H11_510 0.15 -1.2
208,317 - Ac3H11_510 0.15 -2.3
208,364 + Ac3H11_510 0.17 +0.4
208,365 - Ac3H11_510 0.17 +0.5
208,385 + Ac3H11_510 0.18 +0.8
208,385 + Ac3H11_510 0.18 +1.1
208,484 + Ac3H11_510 0.23 -0.1
208,484 + Ac3H11_510 0.23 +0.9
208,484 + Ac3H11_510 0.23 +0.5
208,484 + Ac3H11_510 0.23 -1.0
208,484 + Ac3H11_510 0.23 +0.7
208,484 + Ac3H11_510 0.23 -1.9
208,485 - Ac3H11_510 0.23 -0.5
208,485 - Ac3H11_510 0.23 -1.2
208,485 - Ac3H11_510 0.23 -0.3
208,485 - Ac3H11_510 0.23 -0.2
209,622 - Ac3H11_510 0.79 -0.1
209,622 - Ac3H11_510 0.79 +0.1
210,154 + +1.6
210,155 - -0.3
210,155 - +0.5
210,189 - -0.5
210,238 + -0.1
210,238 + -0.0
210,238 + -0.4
210,239 - -0.6
210,417 + Ac3H11_511 0.31 -0.2
210,417 + Ac3H11_511 0.31 +0.0
210,418 - Ac3H11_511 0.31 +0.6
210,418 - Ac3H11_511 0.31 -0.1
210,418 - Ac3H11_511 0.31 -0.6
210,452 + Ac3H11_511 0.35 +0.0
210,452 + Ac3H11_511 0.35 +0.2
210,452 + Ac3H11_511 0.35 +0.3
210,453 - Ac3H11_511 0.35 +0.4
210,453 - Ac3H11_511 0.35 -3.1
210,453 - Ac3H11_511 0.35 -0.1
210,453 - Ac3H11_511 0.35 +0.3
210,453 - Ac3H11_511 0.35 +0.7
210,453 - Ac3H11_511 0.35 +1.5
210,453 - Ac3H11_511 0.35 +0.3
210,497 + Ac3H11_511 0.41 +0.1
210,543 + Ac3H11_511 0.46 +0.0
210,602 + Ac3H11_511 0.54 -0.9
210,602 + Ac3H11_511 0.54 -1.4
210,602 + Ac3H11_511 0.54 -0.2
210,602 + Ac3H11_511 0.54 -0.4
210,603 - Ac3H11_511 0.54 -0.5
210,743 + Ac3H11_511 0.71 +0.3
210,743 + Ac3H11_511 0.71 -3.2
210,743 + Ac3H11_511 0.71 -0.1
210,743 + Ac3H11_511 0.71 -0.2
210,743 + Ac3H11_511 0.71 +0.9
210,744 - Ac3H11_511 0.71 -3.1
210,744 - Ac3H11_511 0.71 -1.0
210,744 - Ac3H11_511 0.71 -0.7
210,744 - Ac3H11_511 0.71 +0.4
210,744 - Ac3H11_511 0.71 +0.5
210,744 - Ac3H11_511 0.71 +0.5

Or see this region's nucleotide sequence