Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4669

Experiment: Fusidic 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4668 and Ac3H11_4669 are separated by 61 nucleotidesAc3H11_4669 and Ac3H11_4670 are separated by 47 nucleotides Ac3H11_4668 - FOG: GGDEF domain, at 274,338 to 275,474 _4668 Ac3H11_4669 - AMP nucleosidase (EC 3.2.2.4), at 275,536 to 277,017 _4669 Ac3H11_4670 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 277,065 to 279,128 _4670 Position (kb) 275 276 277 278Strain fitness (log2 ratio) -2 -1 0 1 2at 274.955 kb on - strand, within Ac3H11_4668at 274.964 kb on + strand, within Ac3H11_4668at 275.137 kb on + strand, within Ac3H11_4668at 275.138 kb on - strand, within Ac3H11_4668at 275.158 kb on + strand, within Ac3H11_4668at 275.158 kb on + strand, within Ac3H11_4668at 275.240 kb on - strand, within Ac3H11_4668at 275.240 kb on - strand, within Ac3H11_4668at 275.531 kb on + strandat 275.531 kb on + strandat 275.532 kb on - strandat 275.660 kb on + strandat 275.661 kb on - strandat 276.026 kb on + strandat 276.026 kb on + strandat 276.026 kb on + strandat 276.026 kb on + strandat 276.027 kb on - strandat 276.027 kb on - strandat 276.027 kb on - strand, within Ac3H11_4669at 276.044 kb on + strandat 276.045 kb on - strandat 276.320 kb on + strandat 276.320 kb on + strandat 276.321 kb on - strand, within Ac3H11_4669at 276.321 kb on - strandat 276.375 kb on + strandat 276.377 kb on + strand, within Ac3H11_4669at 276.377 kb on + strandat 276.377 kb on + strandat 276.377 kb on + strandat 276.378 kb on - strand, within Ac3H11_4669at 276.378 kb on - strandat 276.378 kb on - strandat 276.378 kb on - strandat 276.378 kb on - strand, within Ac3H11_4669at 276.378 kb on - strandat 276.378 kb on - strandat 276.378 kb on - strandat 276.378 kb on - strand, within Ac3H11_4669at 276.386 kb on + strandat 276.386 kb on + strandat 276.386 kb on + strand, within Ac3H11_4669at 276.387 kb on - strandat 276.387 kb on - strand, within Ac3H11_4669at 276.387 kb on - strand, within Ac3H11_4669at 276.728 kb on + strandat 276.731 kb on + strandat 276.731 kb on + strandat 276.732 kb on - strand, within Ac3H11_4669at 276.797 kb on + strand, within Ac3H11_4669at 276.797 kb on + strand, within Ac3H11_4669at 276.797 kb on + strandat 276.854 kb on + strand, within Ac3H11_4669at 276.855 kb on - strand, within Ac3H11_4669at 276.938 kb on + strandat 276.939 kb on - strandat 277.024 kb on - strandat 277.066 kb on + strandat 277.313 kb on - strand, within Ac3H11_4670at 277.325 kb on - strand, within Ac3H11_4670at 277.325 kb on - strand, within Ac3H11_4670at 277.339 kb on + strand, within Ac3H11_4670at 277.340 kb on - strand, within Ac3H11_4670at 277.340 kb on - strand, within Ac3H11_4670at 277.340 kb on - strand, within Ac3H11_4670at 277.459 kb on + strand, within Ac3H11_4670at 277.460 kb on - strand, within Ac3H11_4670at 277.661 kb on + strand, within Ac3H11_4670at 277.661 kb on + strand, within Ac3H11_4670at 277.661 kb on + strand, within Ac3H11_4670at 277.662 kb on - strand, within Ac3H11_4670at 277.662 kb on - strand, within Ac3H11_4670at 277.737 kb on - strand, within Ac3H11_4670at 277.765 kb on + strand, within Ac3H11_4670at 277.765 kb on + strand, within Ac3H11_4670at 277.766 kb on - strand, within Ac3H11_4670at 277.858 kb on + strand, within Ac3H11_4670at 277.858 kb on + strand, within Ac3H11_4670at 277.858 kb on + strand, within Ac3H11_4670at 277.858 kb on + strand, within Ac3H11_4670at 277.858 kb on + strand, within Ac3H11_4670at 277.858 kb on + strand, within Ac3H11_4670at 277.858 kb on + strand, within Ac3H11_4670at 277.858 kb on + strand, within Ac3H11_4670at 277.859 kb on - strand, within Ac3H11_4670at 277.859 kb on - strand, within Ac3H11_4670at 277.859 kb on - strand, within Ac3H11_4670at 277.859 kb on - strand, within Ac3H11_4670at 277.859 kb on - strand, within Ac3H11_4670at 277.859 kb on - strand, within Ac3H11_4670

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.001 mg/ml
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274,955 - Ac3H11_4668 0.54 +0.5
274,964 + Ac3H11_4668 0.55 +1.2
275,137 + Ac3H11_4668 0.70 +0.1
275,138 - Ac3H11_4668 0.70 +0.0
275,158 + Ac3H11_4668 0.72 +0.5
275,158 + Ac3H11_4668 0.72 -1.5
275,240 - Ac3H11_4668 0.79 +0.3
275,240 - Ac3H11_4668 0.79 +0.0
275,531 + +0.5
275,531 + -0.3
275,532 - -0.5
275,660 + +1.7
275,661 - +0.6
276,026 + +1.7
276,026 + +0.1
276,026 + +1.7
276,026 + +1.7
276,027 - +1.7
276,027 - +1.7
276,027 - Ac3H11_4669 0.33 -2.3
276,044 + -0.9
276,045 - +1.7
276,320 + -0.6
276,320 + +0.7
276,321 - Ac3H11_4669 0.53 +0.7
276,321 - +0.7
276,375 + +0.1
276,377 + Ac3H11_4669 0.57 -0.3
276,377 + +1.7
276,377 + -0.3
276,377 + +1.7
276,378 - Ac3H11_4669 0.57 -0.9
276,378 - +0.1
276,378 - +0.1
276,378 - +1.7
276,378 - Ac3H11_4669 0.57 +1.0
276,378 - +1.7
276,378 - +0.7
276,378 - +0.1
276,378 - Ac3H11_4669 0.57 +0.7
276,386 + +0.1
276,386 + +0.1
276,386 + Ac3H11_4669 0.57 -0.3
276,387 - +0.7
276,387 - Ac3H11_4669 0.57 -1.5
276,387 - Ac3H11_4669 0.57 +1.7
276,728 + -0.3
276,731 + +0.7
276,731 + +1.7
276,732 - Ac3H11_4669 0.81 +0.1
276,797 + Ac3H11_4669 0.85 +0.7
276,797 + Ac3H11_4669 0.85 -2.0
276,797 + +0.7
276,854 + Ac3H11_4669 0.89 -0.3
276,855 - Ac3H11_4669 0.89 +0.7
276,938 + -2.2
276,939 - +0.7
277,024 - -0.3
277,066 + -1.2
277,313 - Ac3H11_4670 0.12 +0.8
277,325 - Ac3H11_4670 0.13 +0.4
277,325 - Ac3H11_4670 0.13 +0.8
277,339 + Ac3H11_4670 0.13 -1.1
277,340 - Ac3H11_4670 0.13 -1.1
277,340 - Ac3H11_4670 0.13 +0.1
277,340 - Ac3H11_4670 0.13 +1.9
277,459 + Ac3H11_4670 0.19 +0.4
277,460 - Ac3H11_4670 0.19 -0.1
277,661 + Ac3H11_4670 0.29 +1.0
277,661 + Ac3H11_4670 0.29 -0.5
277,661 + Ac3H11_4670 0.29 +0.6
277,662 - Ac3H11_4670 0.29 -0.3
277,662 - Ac3H11_4670 0.29 -0.0
277,737 - Ac3H11_4670 0.33 +1.2
277,765 + Ac3H11_4670 0.34 +0.0
277,765 + Ac3H11_4670 0.34 +0.8
277,766 - Ac3H11_4670 0.34 -2.3
277,858 + Ac3H11_4670 0.38 +0.5
277,858 + Ac3H11_4670 0.38 +0.7
277,858 + Ac3H11_4670 0.38 +0.4
277,858 + Ac3H11_4670 0.38 +0.4
277,858 + Ac3H11_4670 0.38 +0.2
277,858 + Ac3H11_4670 0.38 +0.2
277,858 + Ac3H11_4670 0.38 +1.3
277,858 + Ac3H11_4670 0.38 +0.2
277,859 - Ac3H11_4670 0.38 -0.1
277,859 - Ac3H11_4670 0.38 +1.1
277,859 - Ac3H11_4670 0.38 -0.2
277,859 - Ac3H11_4670 0.38 +1.5
277,859 - Ac3H11_4670 0.38 -0.4
277,859 - Ac3H11_4670 0.38 +0.1

Or see this region's nucleotide sequence