Experiment: Fusidic 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_4173 and Ac3H11_4174 overlap by 47 nucleotides Ac3H11_4174 and Ac3H11_4175 are separated by 45 nucleotides
Ac3H11_4173 - Putative oxidoreductase in 4-hydroxyproline catabolic gene cluster, at 428,240 to 429,580
_4173
Ac3H11_4174 - TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter, at 429,534 to 430,364
_4174
Ac3H11_4175 - TRAP-type C4-dicarboxylate transport system, large permease component, at 430,410 to 431,675
_4175
Position (kb) 429
430
431 Strain fitness (log2 ratio) -2
-1
0
1 at 428.880 kb on + strand, within Ac3H11_4173 at 428.880 kb on + strand, within Ac3H11_4173 at 428.880 kb on + strand, within Ac3H11_4173 at 428.884 kb on + strand, within Ac3H11_4173 at 428.884 kb on + strand, within Ac3H11_4173 at 428.884 kb on + strand, within Ac3H11_4173 at 428.884 kb on + strand, within Ac3H11_4173 at 428.885 kb on - strand, within Ac3H11_4173 at 428.907 kb on - strand, within Ac3H11_4173 at 428.976 kb on + strand, within Ac3H11_4173 at 429.359 kb on + strand, within Ac3H11_4173 at 429.360 kb on - strand, within Ac3H11_4173 at 429.655 kb on + strand, within Ac3H11_4174 at 429.656 kb on - strand, within Ac3H11_4174 at 429.685 kb on + strand, within Ac3H11_4174 at 429.894 kb on + strand, within Ac3H11_4174 at 429.895 kb on - strand, within Ac3H11_4174 at 429.912 kb on + strand, within Ac3H11_4174 at 429.936 kb on + strand, within Ac3H11_4174 at 429.936 kb on + strand, within Ac3H11_4174 at 430.491 kb on + strand at 430.491 kb on + strand at 430.491 kb on + strand at 430.491 kb on + strand at 430.492 kb on - strand at 430.492 kb on - strand at 430.492 kb on - strand at 430.492 kb on - strand at 430.563 kb on + strand, within Ac3H11_4175 at 430.563 kb on + strand, within Ac3H11_4175 at 430.563 kb on + strand, within Ac3H11_4175 at 430.563 kb on + strand, within Ac3H11_4175 at 430.564 kb on - strand, within Ac3H11_4175 at 430.564 kb on - strand, within Ac3H11_4175 at 430.564 kb on - strand, within Ac3H11_4175 at 430.687 kb on - strand, within Ac3H11_4175 at 430.794 kb on + strand, within Ac3H11_4175 at 430.794 kb on + strand, within Ac3H11_4175 at 430.827 kb on + strand, within Ac3H11_4175 at 430.827 kb on + strand, within Ac3H11_4175 at 430.828 kb on - strand, within Ac3H11_4175 at 430.878 kb on + strand, within Ac3H11_4175 at 430.879 kb on - strand, within Ac3H11_4175 at 430.879 kb on - strand, within Ac3H11_4175 at 430.879 kb on - strand, within Ac3H11_4175 at 430.989 kb on + strand, within Ac3H11_4175 at 430.989 kb on + strand, within Ac3H11_4175 at 430.990 kb on - strand, within Ac3H11_4175 at 431.163 kb on + strand, within Ac3H11_4175 at 431.164 kb on - strand, within Ac3H11_4175 at 431.164 kb on - strand, within Ac3H11_4175 at 431.224 kb on - strand, within Ac3H11_4175 at 431.224 kb on - strand, within Ac3H11_4175 at 431.224 kb on - strand, within Ac3H11_4175 at 431.284 kb on - strand, within Ac3H11_4175
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.001 mg/ml remove 428,880 + Ac3H11_4173 0.48 +1.2 428,880 + Ac3H11_4173 0.48 +0.1 428,880 + Ac3H11_4173 0.48 +0.7 428,884 + Ac3H11_4173 0.48 -0.6 428,884 + Ac3H11_4173 0.48 +0.7 428,884 + Ac3H11_4173 0.48 -0.5 428,884 + Ac3H11_4173 0.48 -0.1 428,885 - Ac3H11_4173 0.48 -0.5 428,907 - Ac3H11_4173 0.50 +1.1 428,976 + Ac3H11_4173 0.55 -0.9 429,359 + Ac3H11_4173 0.83 +0.0 429,360 - Ac3H11_4173 0.84 +1.0 429,655 + Ac3H11_4174 0.15 -0.4 429,656 - Ac3H11_4174 0.15 -1.2 429,685 + Ac3H11_4174 0.18 -0.2 429,894 + Ac3H11_4174 0.43 +0.9 429,895 - Ac3H11_4174 0.43 -1.7 429,912 + Ac3H11_4174 0.45 -0.3 429,936 + Ac3H11_4174 0.48 -0.8 429,936 + Ac3H11_4174 0.48 -0.0 430,491 + +1.1 430,491 + -2.1 430,491 + +0.7 430,491 + -1.1 430,492 - +0.9 430,492 - +0.3 430,492 - +0.8 430,492 - +1.1 430,563 + Ac3H11_4175 0.12 +0.2 430,563 + Ac3H11_4175 0.12 +0.7 430,563 + Ac3H11_4175 0.12 -1.0 430,563 + Ac3H11_4175 0.12 -1.0 430,564 - Ac3H11_4175 0.12 +0.5 430,564 - Ac3H11_4175 0.12 -0.2 430,564 - Ac3H11_4175 0.12 -0.5 430,687 - Ac3H11_4175 0.22 -0.3 430,794 + Ac3H11_4175 0.30 +0.9 430,794 + Ac3H11_4175 0.30 +0.5 430,827 + Ac3H11_4175 0.33 -0.1 430,827 + Ac3H11_4175 0.33 -0.2 430,828 - Ac3H11_4175 0.33 +0.4 430,878 + Ac3H11_4175 0.37 -0.5 430,879 - Ac3H11_4175 0.37 -0.6 430,879 - Ac3H11_4175 0.37 +0.7 430,879 - Ac3H11_4175 0.37 -0.5 430,989 + Ac3H11_4175 0.46 +0.7 430,989 + Ac3H11_4175 0.46 +0.4 430,990 - Ac3H11_4175 0.46 -1.1 431,163 + Ac3H11_4175 0.59 +1.4 431,164 - Ac3H11_4175 0.60 -0.1 431,164 - Ac3H11_4175 0.60 -1.2 431,224 - Ac3H11_4175 0.64 -0.7 431,224 - Ac3H11_4175 0.64 +0.9 431,224 - Ac3H11_4175 0.64 +0.3 431,284 - Ac3H11_4175 0.69 -1.5
Or see this region's nucleotide sequence