Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3842

Experiment: Fusidic 0.001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_3840 and Ac3H11_3841 are separated by 73 nucleotidesAc3H11_3841 and Ac3H11_3842 are separated by 150 nucleotidesAc3H11_3842 and Ac3H11_3843 are separated by 268 nucleotides Ac3H11_3840 - Pantoate--beta-alanine ligase (EC 6.3.2.1), at 56,674 to 57,519 _3840 Ac3H11_3841 - Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24), at 57,593 to 58,315 _3841 Ac3H11_3842 - Large protein containing transglutaminase-like domain, at 58,466 to 61,963 _3842 Ac3H11_3843 - Protein containing domains DUF404, DUF407, DUF403, at 62,232 to 64,901 _3843 Position (kb) 58 59 60 61 62Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 57.550 kb on + strandat 57.886 kb on - strand, within Ac3H11_3841at 57.886 kb on - strand, within Ac3H11_3841at 58.296 kb on - strandat 58.315 kb on + strandat 58.316 kb on - strandat 58.451 kb on + strandat 58.451 kb on + strandat 58.451 kb on + strandat 58.451 kb on + strandat 58.452 kb on - strandat 58.452 kb on - strandat 58.465 kb on + strandat 58.465 kb on + strandat 58.465 kb on + strandat 58.465 kb on + strandat 58.465 kb on + strandat 58.466 kb on - strandat 58.466 kb on - strandat 58.466 kb on - strandat 58.502 kb on + strandat 58.502 kb on + strandat 58.502 kb on + strandat 58.503 kb on - strandat 58.503 kb on - strandat 58.649 kb on + strandat 58.649 kb on + strandat 58.650 kb on - strandat 58.650 kb on - strandat 58.650 kb on - strandat 58.650 kb on - strandat 58.728 kb on - strandat 58.728 kb on - strandat 58.781 kb on + strandat 58.782 kb on - strandat 58.782 kb on - strandat 58.782 kb on - strandat 58.782 kb on - strandat 58.814 kb on + strandat 58.814 kb on + strandat 58.815 kb on - strandat 58.815 kb on - strandat 58.815 kb on - strandat 58.815 kb on - strandat 58.853 kb on + strand, within Ac3H11_3842at 58.854 kb on - strand, within Ac3H11_3842at 59.034 kb on + strand, within Ac3H11_3842at 59.035 kb on - strand, within Ac3H11_3842at 59.035 kb on - strand, within Ac3H11_3842at 59.035 kb on - strand, within Ac3H11_3842at 59.168 kb on + strand, within Ac3H11_3842at 59.168 kb on + strand, within Ac3H11_3842at 59.168 kb on + strand, within Ac3H11_3842at 59.168 kb on + strand, within Ac3H11_3842at 59.169 kb on - strand, within Ac3H11_3842at 59.169 kb on - strand, within Ac3H11_3842at 59.169 kb on - strand, within Ac3H11_3842at 59.339 kb on + strand, within Ac3H11_3842at 59.339 kb on + strand, within Ac3H11_3842at 59.340 kb on - strand, within Ac3H11_3842at 59.340 kb on - strand, within Ac3H11_3842at 59.366 kb on + strand, within Ac3H11_3842at 59.366 kb on + strand, within Ac3H11_3842at 59.366 kb on + strand, within Ac3H11_3842at 59.367 kb on - strand, within Ac3H11_3842at 59.574 kb on - strand, within Ac3H11_3842at 59.726 kb on + strand, within Ac3H11_3842at 59.726 kb on + strand, within Ac3H11_3842at 59.727 kb on - strand, within Ac3H11_3842at 59.792 kb on + strand, within Ac3H11_3842at 59.792 kb on + strand, within Ac3H11_3842at 59.793 kb on - strand, within Ac3H11_3842at 59.807 kb on + strand, within Ac3H11_3842at 59.822 kb on + strand, within Ac3H11_3842at 59.822 kb on + strand, within Ac3H11_3842at 59.822 kb on + strand, within Ac3H11_3842at 59.822 kb on + strand, within Ac3H11_3842at 59.822 kb on + strand, within Ac3H11_3842at 59.823 kb on - strand, within Ac3H11_3842at 59.823 kb on - strand, within Ac3H11_3842at 59.825 kb on + strand, within Ac3H11_3842at 59.825 kb on + strand, within Ac3H11_3842at 59.825 kb on + strand, within Ac3H11_3842at 59.825 kb on + strand, within Ac3H11_3842at 59.948 kb on + strand, within Ac3H11_3842at 59.949 kb on - strand, within Ac3H11_3842at 60.237 kb on - strand, within Ac3H11_3842at 60.237 kb on - strand, within Ac3H11_3842at 60.458 kb on + strand, within Ac3H11_3842at 60.470 kb on + strand, within Ac3H11_3842at 60.470 kb on + strand, within Ac3H11_3842at 60.470 kb on + strand, within Ac3H11_3842at 60.470 kb on + strand, within Ac3H11_3842at 60.470 kb on + strand, within Ac3H11_3842at 60.470 kb on + strand, within Ac3H11_3842at 60.471 kb on - strand, within Ac3H11_3842at 60.471 kb on - strand, within Ac3H11_3842at 60.471 kb on - strand, within Ac3H11_3842at 60.471 kb on - strand, within Ac3H11_3842at 60.471 kb on - strand, within Ac3H11_3842at 60.471 kb on - strand, within Ac3H11_3842at 60.471 kb on - strand, within Ac3H11_3842at 60.471 kb on - strand, within Ac3H11_3842at 60.506 kb on - strand, within Ac3H11_3842at 60.507 kb on - strand, within Ac3H11_3842at 60.507 kb on - strand, within Ac3H11_3842at 60.698 kb on + strand, within Ac3H11_3842at 60.857 kb on + strand, within Ac3H11_3842at 60.857 kb on + strand, within Ac3H11_3842at 60.857 kb on + strand, within Ac3H11_3842at 60.884 kb on + strand, within Ac3H11_3842at 60.884 kb on + strand, within Ac3H11_3842at 60.884 kb on + strand, within Ac3H11_3842at 60.885 kb on - strand, within Ac3H11_3842at 60.885 kb on - strand, within Ac3H11_3842at 60.885 kb on - strand, within Ac3H11_3842at 60.885 kb on - strand, within Ac3H11_3842at 60.885 kb on - strand, within Ac3H11_3842at 60.885 kb on - strand, within Ac3H11_3842at 60.885 kb on - strand, within Ac3H11_3842at 60.959 kb on + strand, within Ac3H11_3842at 60.959 kb on + strand, within Ac3H11_3842at 60.959 kb on + strand, within Ac3H11_3842at 60.959 kb on + strand, within Ac3H11_3842at 60.960 kb on + strand, within Ac3H11_3842at 60.960 kb on - strand, within Ac3H11_3842at 60.960 kb on - strand, within Ac3H11_3842at 60.960 kb on - strand, within Ac3H11_3842at 60.960 kb on - strand, within Ac3H11_3842at 61.008 kb on - strand, within Ac3H11_3842at 61.035 kb on + strand, within Ac3H11_3842at 61.035 kb on + strand, within Ac3H11_3842at 61.035 kb on + strand, within Ac3H11_3842at 61.514 kb on + strand, within Ac3H11_3842at 61.515 kb on - strand, within Ac3H11_3842at 61.515 kb on - strand, within Ac3H11_3842at 61.653 kb on - strandat 61.653 kb on - strandat 61.763 kb on + strandat 61.794 kb on - strandat 61.794 kb on - strandat 61.794 kb on - strandat 61.817 kb on + strandat 61.818 kb on - strandat 61.818 kb on - strandat 61.986 kb on + strandat 61.987 kb on - strandat 62.096 kb on + strandat 62.096 kb on + strandat 62.096 kb on + strandat 62.096 kb on + strandat 62.096 kb on + strandat 62.096 kb on + strandat 62.096 kb on + strandat 62.096 kb on + strandat 62.097 kb on - strandat 62.097 kb on - strandat 62.097 kb on - strandat 62.097 kb on - strandat 62.097 kb on - strandat 62.118 kb on + strandat 62.118 kb on + strandat 62.119 kb on - strandat 62.119 kb on - strandat 62.119 kb on - strandat 62.119 kb on - strandat 62.541 kb on + strand, within Ac3H11_3843at 62.541 kb on + strand, within Ac3H11_3843at 62.541 kb on + strand, within Ac3H11_3843at 62.542 kb on - strand, within Ac3H11_3843at 62.542 kb on - strand, within Ac3H11_3843at 62.542 kb on - strand, within Ac3H11_3843at 62.542 kb on - strand, within Ac3H11_3843at 62.542 kb on - strand, within Ac3H11_3843at 62.542 kb on - strand, within Ac3H11_3843at 62.551 kb on - strand, within Ac3H11_3843at 62.551 kb on - strand, within Ac3H11_3843at 62.688 kb on + strand, within Ac3H11_3843at 62.688 kb on + strand, within Ac3H11_3843at 62.688 kb on + strand, within Ac3H11_3843at 62.689 kb on - strand, within Ac3H11_3843at 62.689 kb on - strand, within Ac3H11_3843at 62.689 kb on - strand, within Ac3H11_3843at 62.689 kb on - strand, within Ac3H11_3843at 62.755 kb on - strand, within Ac3H11_3843at 62.884 kb on + strand, within Ac3H11_3843at 62.885 kb on - strand, within Ac3H11_3843at 62.889 kb on + strand, within Ac3H11_3843at 62.889 kb on + strand, within Ac3H11_3843at 62.889 kb on + strand, within Ac3H11_3843at 62.889 kb on + strand, within Ac3H11_3843at 62.889 kb on + strand, within Ac3H11_3843at 62.889 kb on + strand, within Ac3H11_3843at 62.889 kb on + strand, within Ac3H11_3843at 62.889 kb on + strand, within Ac3H11_3843

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.001 mg/ml
remove
57,550 + +0.6
57,886 - Ac3H11_3841 0.41 -1.5
57,886 - Ac3H11_3841 0.41 -0.3
58,296 - +0.5
58,315 + +0.9
58,316 - +0.2
58,451 + -0.1
58,451 + +0.3
58,451 + -0.8
58,451 + -0.1
58,452 - -1.1
58,452 - -1.1
58,465 + -0.5
58,465 + -0.6
58,465 + +1.2
58,465 + +1.9
58,465 + +0.5
58,466 - +0.3
58,466 - +1.3
58,466 - -0.8
58,502 + -0.2
58,502 + -0.4
58,502 + +0.7
58,503 - -0.4
58,503 - -0.9
58,649 + +0.2
58,649 + -0.8
58,650 - -1.4
58,650 - +0.1
58,650 - +0.4
58,650 - +0.1
58,728 - +1.1
58,728 - +1.1
58,781 + +0.3
58,782 - +1.5
58,782 - -0.3
58,782 - +0.1
58,782 - -0.1
58,814 + -1.0
58,814 + -1.1
58,815 - -3.4
58,815 - +0.4
58,815 - -0.7
58,815 - +1.3
58,853 + Ac3H11_3842 0.11 -0.2
58,854 - Ac3H11_3842 0.11 -0.6
59,034 + Ac3H11_3842 0.16 -0.3
59,035 - Ac3H11_3842 0.16 -0.7
59,035 - Ac3H11_3842 0.16 -0.7
59,035 - Ac3H11_3842 0.16 -1.2
59,168 + Ac3H11_3842 0.20 +0.4
59,168 + Ac3H11_3842 0.20 -0.5
59,168 + Ac3H11_3842 0.20 +0.3
59,168 + Ac3H11_3842 0.20 -0.6
59,169 - Ac3H11_3842 0.20 +0.2
59,169 - Ac3H11_3842 0.20 +1.5
59,169 - Ac3H11_3842 0.20 -1.7
59,339 + Ac3H11_3842 0.25 +2.2
59,339 + Ac3H11_3842 0.25 -0.1
59,340 - Ac3H11_3842 0.25 +0.2
59,340 - Ac3H11_3842 0.25 +1.1
59,366 + Ac3H11_3842 0.26 +0.5
59,366 + Ac3H11_3842 0.26 +1.3
59,366 + Ac3H11_3842 0.26 +0.6
59,367 - Ac3H11_3842 0.26 +0.5
59,574 - Ac3H11_3842 0.32 -1.1
59,726 + Ac3H11_3842 0.36 -0.2
59,726 + Ac3H11_3842 0.36 +0.8
59,727 - Ac3H11_3842 0.36 -0.1
59,792 + Ac3H11_3842 0.38 -1.3
59,792 + Ac3H11_3842 0.38 +0.4
59,793 - Ac3H11_3842 0.38 -0.1
59,807 + Ac3H11_3842 0.38 +0.7
59,822 + Ac3H11_3842 0.39 +0.2
59,822 + Ac3H11_3842 0.39 -0.3
59,822 + Ac3H11_3842 0.39 +0.2
59,822 + Ac3H11_3842 0.39 +0.9
59,822 + Ac3H11_3842 0.39 -0.5
59,823 - Ac3H11_3842 0.39 -1.1
59,823 - Ac3H11_3842 0.39 +0.0
59,825 + Ac3H11_3842 0.39 -0.1
59,825 + Ac3H11_3842 0.39 -3.1
59,825 + Ac3H11_3842 0.39 -0.0
59,825 + Ac3H11_3842 0.39 -0.1
59,948 + Ac3H11_3842 0.42 +2.4
59,949 - Ac3H11_3842 0.42 +0.5
60,237 - Ac3H11_3842 0.51 +0.4
60,237 - Ac3H11_3842 0.51 -0.4
60,458 + Ac3H11_3842 0.57 -0.3
60,470 + Ac3H11_3842 0.57 +2.0
60,470 + Ac3H11_3842 0.57 +0.3
60,470 + Ac3H11_3842 0.57 -0.5
60,470 + Ac3H11_3842 0.57 -0.2
60,470 + Ac3H11_3842 0.57 +1.1
60,470 + Ac3H11_3842 0.57 +0.2
60,471 - Ac3H11_3842 0.57 -1.5
60,471 - Ac3H11_3842 0.57 -0.2
60,471 - Ac3H11_3842 0.57 +2.3
60,471 - Ac3H11_3842 0.57 +1.0
60,471 - Ac3H11_3842 0.57 -2.5
60,471 - Ac3H11_3842 0.57 +0.3
60,471 - Ac3H11_3842 0.57 -1.4
60,471 - Ac3H11_3842 0.57 -0.8
60,506 - Ac3H11_3842 0.58 -1.2
60,507 - Ac3H11_3842 0.58 -1.2
60,507 - Ac3H11_3842 0.58 -0.6
60,698 + Ac3H11_3842 0.64 +0.6
60,857 + Ac3H11_3842 0.68 +0.3
60,857 + Ac3H11_3842 0.68 +1.1
60,857 + Ac3H11_3842 0.68 +0.0
60,884 + Ac3H11_3842 0.69 +0.2
60,884 + Ac3H11_3842 0.69 -0.8
60,884 + Ac3H11_3842 0.69 -0.5
60,885 - Ac3H11_3842 0.69 +0.1
60,885 - Ac3H11_3842 0.69 -0.2
60,885 - Ac3H11_3842 0.69 -0.1
60,885 - Ac3H11_3842 0.69 +0.6
60,885 - Ac3H11_3842 0.69 +0.7
60,885 - Ac3H11_3842 0.69 +0.2
60,885 - Ac3H11_3842 0.69 -1.7
60,959 + Ac3H11_3842 0.71 +0.7
60,959 + Ac3H11_3842 0.71 +0.3
60,959 + Ac3H11_3842 0.71 +0.1
60,959 + Ac3H11_3842 0.71 -0.1
60,960 + Ac3H11_3842 0.71 +0.4
60,960 - Ac3H11_3842 0.71 +0.5
60,960 - Ac3H11_3842 0.71 +0.3
60,960 - Ac3H11_3842 0.71 -2.9
60,960 - Ac3H11_3842 0.71 +0.8
61,008 - Ac3H11_3842 0.73 -0.6
61,035 + Ac3H11_3842 0.73 -0.2
61,035 + Ac3H11_3842 0.73 -0.7
61,035 + Ac3H11_3842 0.73 -0.9
61,514 + Ac3H11_3842 0.87 +0.4
61,515 - Ac3H11_3842 0.87 +0.4
61,515 - Ac3H11_3842 0.87 -0.2
61,653 - +1.1
61,653 - -0.5
61,763 + -0.9
61,794 - +1.1
61,794 - -1.4
61,794 - -1.4
61,817 + +1.4
61,818 - +0.4
61,818 - -0.4
61,986 + -0.3
61,987 - -2.7
62,096 + +1.4
62,096 + +0.2
62,096 + -0.6
62,096 + -0.1
62,096 + +0.4
62,096 + -0.4
62,096 + -1.7
62,096 + -0.6
62,097 - -0.8
62,097 - -1.9
62,097 - -0.3
62,097 - -0.7
62,097 - -0.1
62,118 + +0.2
62,118 + +0.6
62,119 - +0.7
62,119 - +0.8
62,119 - -0.7
62,119 - -2.2
62,541 + Ac3H11_3843 0.12 -0.3
62,541 + Ac3H11_3843 0.12 -2.1
62,541 + Ac3H11_3843 0.12 +0.1
62,542 - Ac3H11_3843 0.12 -1.1
62,542 - Ac3H11_3843 0.12 -0.8
62,542 - Ac3H11_3843 0.12 -0.5
62,542 - Ac3H11_3843 0.12 +0.0
62,542 - Ac3H11_3843 0.12 -1.7
62,542 - Ac3H11_3843 0.12 -1.5
62,551 - Ac3H11_3843 0.12 -0.2
62,551 - Ac3H11_3843 0.12 -1.0
62,688 + Ac3H11_3843 0.17 +0.1
62,688 + Ac3H11_3843 0.17 +0.5
62,688 + Ac3H11_3843 0.17 +0.4
62,689 - Ac3H11_3843 0.17 +0.0
62,689 - Ac3H11_3843 0.17 +0.6
62,689 - Ac3H11_3843 0.17 +1.6
62,689 - Ac3H11_3843 0.17 -0.5
62,755 - Ac3H11_3843 0.20 -0.5
62,884 + Ac3H11_3843 0.24 +0.1
62,885 - Ac3H11_3843 0.24 +0.5
62,889 + Ac3H11_3843 0.25 -0.8
62,889 + Ac3H11_3843 0.25 +0.3
62,889 + Ac3H11_3843 0.25 +0.2
62,889 + Ac3H11_3843 0.25 -0.1
62,889 + Ac3H11_3843 0.25 +0.7
62,889 + Ac3H11_3843 0.25 -2.5
62,889 + Ac3H11_3843 0.25 +0.5
62,889 + Ac3H11_3843 0.25 +0.6

Or see this region's nucleotide sequence