Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3636

Experiment: Fusidic 0.001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_3635 and Ac3H11_3636 are separated by 80 nucleotidesAc3H11_3636 and Ac3H11_3637 overlap by 4 nucleotidesAc3H11_3637 and Ac3H11_3638 are separated by 163 nucleotides Ac3H11_3635 - Signaling protein with a acyltransferase and GGDEF domains, at 192,578 to 194,302 _3635 Ac3H11_3636 - hypothetical protein, at 194,383 to 195,855 _3636 Ac3H11_3637 - C-1'-hydroxylase CruF, at 195,852 to 196,673 _3637 Ac3H11_3638 - Biotin synthesis protein BioH, at 196,837 to 197,658 _3638 Position (kb) 194 195 196Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 193.406 kb on + strand, within Ac3H11_3635at 193.406 kb on + strand, within Ac3H11_3635at 193.406 kb on + strand, within Ac3H11_3635at 193.406 kb on + strand, within Ac3H11_3635at 193.406 kb on + strand, within Ac3H11_3635at 193.406 kb on + strand, within Ac3H11_3635at 193.406 kb on + strand, within Ac3H11_3635at 193.407 kb on - strand, within Ac3H11_3635at 193.407 kb on - strand, within Ac3H11_3635at 193.488 kb on + strand, within Ac3H11_3635at 193.488 kb on + strand, within Ac3H11_3635at 193.488 kb on + strand, within Ac3H11_3635at 193.578 kb on + strand, within Ac3H11_3635at 193.611 kb on + strand, within Ac3H11_3635at 193.611 kb on + strand, within Ac3H11_3635at 193.611 kb on + strand, within Ac3H11_3635at 193.611 kb on + strand, within Ac3H11_3635at 193.611 kb on + strand, within Ac3H11_3635at 193.611 kb on + strand, within Ac3H11_3635at 193.612 kb on - strand, within Ac3H11_3635at 193.612 kb on - strand, within Ac3H11_3635at 193.612 kb on - strand, within Ac3H11_3635at 193.612 kb on - strand, within Ac3H11_3635at 193.675 kb on - strand, within Ac3H11_3635at 193.722 kb on + strand, within Ac3H11_3635at 193.722 kb on + strand, within Ac3H11_3635at 193.722 kb on + strand, within Ac3H11_3635at 193.722 kb on + strand, within Ac3H11_3635at 193.723 kb on - strand, within Ac3H11_3635at 193.723 kb on - strand, within Ac3H11_3635at 193.723 kb on - strand, within Ac3H11_3635at 193.723 kb on - strand, within Ac3H11_3635at 193.794 kb on + strand, within Ac3H11_3635at 193.795 kb on - strand, within Ac3H11_3635at 193.853 kb on + strand, within Ac3H11_3635at 193.980 kb on + strand, within Ac3H11_3635at 193.980 kb on + strand, within Ac3H11_3635at 193.981 kb on - strand, within Ac3H11_3635at 194.004 kb on + strand, within Ac3H11_3635at 194.004 kb on + strand, within Ac3H11_3635at 194.091 kb on - strand, within Ac3H11_3635at 194.163 kb on + strandat 194.163 kb on + strandat 194.163 kb on + strandat 194.163 kb on + strandat 194.163 kb on + strandat 194.164 kb on - strandat 194.164 kb on - strandat 194.673 kb on + strand, within Ac3H11_3636at 194.673 kb on + strand, within Ac3H11_3636at 194.674 kb on - strand, within Ac3H11_3636at 194.674 kb on - strand, within Ac3H11_3636at 194.780 kb on + strand, within Ac3H11_3636at 195.008 kb on + strand, within Ac3H11_3636at 195.008 kb on + strand, within Ac3H11_3636at 195.008 kb on + strand, within Ac3H11_3636at 195.009 kb on - strand, within Ac3H11_3636at 195.009 kb on - strand, within Ac3H11_3636at 195.009 kb on - strand, within Ac3H11_3636at 195.009 kb on - strand, within Ac3H11_3636at 195.009 kb on - strand, within Ac3H11_3636at 195.009 kb on - strand, within Ac3H11_3636at 195.009 kb on - strand, within Ac3H11_3636at 195.081 kb on + strand, within Ac3H11_3636at 195.082 kb on - strand, within Ac3H11_3636at 195.093 kb on - strand, within Ac3H11_3636at 195.093 kb on - strand, within Ac3H11_3636at 195.152 kb on + strand, within Ac3H11_3636at 195.152 kb on + strand, within Ac3H11_3636at 195.153 kb on - strand, within Ac3H11_3636at 195.458 kb on + strand, within Ac3H11_3636at 195.458 kb on + strand, within Ac3H11_3636at 195.458 kb on + strand, within Ac3H11_3636at 195.458 kb on + strand, within Ac3H11_3636at 195.458 kb on + strand, within Ac3H11_3636at 195.458 kb on + strand, within Ac3H11_3636at 195.458 kb on + strand, within Ac3H11_3636at 195.459 kb on - strand, within Ac3H11_3636at 195.459 kb on - strand, within Ac3H11_3636at 195.459 kb on - strand, within Ac3H11_3636at 195.459 kb on - strand, within Ac3H11_3636at 195.459 kb on - strand, within Ac3H11_3636at 195.459 kb on - strand, within Ac3H11_3636at 195.459 kb on - strand, within Ac3H11_3636at 195.459 kb on - strand, within Ac3H11_3636at 195.587 kb on + strand, within Ac3H11_3636at 195.587 kb on + strand, within Ac3H11_3636at 195.587 kb on + strand, within Ac3H11_3636at 195.588 kb on - strand, within Ac3H11_3636at 195.588 kb on - strand, within Ac3H11_3636at 195.588 kb on - strand, within Ac3H11_3636at 195.588 kb on - strand, within Ac3H11_3636at 195.588 kb on - strand, within Ac3H11_3636at 195.855 kb on + strandat 195.889 kb on + strandat 195.994 kb on + strand, within Ac3H11_3637at 195.994 kb on + strand, within Ac3H11_3637at 195.994 kb on + strand, within Ac3H11_3637at 195.994 kb on + strand, within Ac3H11_3637at 195.995 kb on - strand, within Ac3H11_3637at 195.995 kb on - strand, within Ac3H11_3637at 195.995 kb on - strand, within Ac3H11_3637at 196.183 kb on + strand, within Ac3H11_3637at 196.183 kb on + strand, within Ac3H11_3637at 196.183 kb on + strand, within Ac3H11_3637at 196.184 kb on - strand, within Ac3H11_3637at 196.192 kb on + strand, within Ac3H11_3637at 196.192 kb on + strand, within Ac3H11_3637at 196.192 kb on + strand, within Ac3H11_3637at 196.192 kb on + strand, within Ac3H11_3637at 196.193 kb on - strand, within Ac3H11_3637at 196.193 kb on - strand, within Ac3H11_3637at 196.318 kb on + strand, within Ac3H11_3637at 196.318 kb on + strand, within Ac3H11_3637at 196.319 kb on - strand, within Ac3H11_3637at 196.327 kb on + strand, within Ac3H11_3637at 196.327 kb on + strand, within Ac3H11_3637at 196.327 kb on + strand, within Ac3H11_3637at 196.327 kb on + strand, within Ac3H11_3637at 196.328 kb on - strand, within Ac3H11_3637at 196.328 kb on - strand, within Ac3H11_3637at 196.328 kb on - strand, within Ac3H11_3637at 196.328 kb on - strand, within Ac3H11_3637at 196.328 kb on - strand, within Ac3H11_3637at 196.399 kb on + strand, within Ac3H11_3637at 196.399 kb on + strand, within Ac3H11_3637at 196.400 kb on - strand, within Ac3H11_3637at 196.400 kb on - strand, within Ac3H11_3637at 196.400 kb on - strand, within Ac3H11_3637at 196.400 kb on - strand, within Ac3H11_3637at 196.400 kb on - strand, within Ac3H11_3637at 196.405 kb on + strand, within Ac3H11_3637at 196.405 kb on + strand, within Ac3H11_3637at 196.405 kb on + strand, within Ac3H11_3637at 196.405 kb on + strand, within Ac3H11_3637at 196.405 kb on + strand, within Ac3H11_3637at 196.406 kb on - strand, within Ac3H11_3637at 196.406 kb on - strand, within Ac3H11_3637at 196.406 kb on - strand, within Ac3H11_3637at 196.406 kb on - strand, within Ac3H11_3637at 196.406 kb on - strand, within Ac3H11_3637at 196.610 kb on - strandat 196.610 kb on - strandat 196.610 kb on - strandat 196.627 kb on + strandat 196.627 kb on + strandat 196.628 kb on - strandat 196.628 kb on - strandat 196.628 kb on - strandat 196.693 kb on - strandat 196.709 kb on + strandat 196.710 kb on - strandat 196.710 kb on - strandat 196.710 kb on - strandat 196.805 kb on - strandat 196.805 kb on - strandat 196.806 kb on + strandat 196.806 kb on + strandat 196.806 kb on + strandat 196.806 kb on + strandat 196.806 kb on + strandat 196.807 kb on - strandat 196.807 kb on - strandat 196.807 kb on - strandat 196.807 kb on - strandat 196.807 kb on - strandat 196.807 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.001 mg/ml
remove
193,406 + Ac3H11_3635 0.48 +0.9
193,406 + Ac3H11_3635 0.48 +0.7
193,406 + Ac3H11_3635 0.48 +0.2
193,406 + Ac3H11_3635 0.48 -0.7
193,406 + Ac3H11_3635 0.48 -0.3
193,406 + Ac3H11_3635 0.48 -1.0
193,406 + Ac3H11_3635 0.48 -0.1
193,407 - Ac3H11_3635 0.48 -0.1
193,407 - Ac3H11_3635 0.48 +0.1
193,488 + Ac3H11_3635 0.53 +0.7
193,488 + Ac3H11_3635 0.53 -0.5
193,488 + Ac3H11_3635 0.53 -0.2
193,578 + Ac3H11_3635 0.58 -0.3
193,611 + Ac3H11_3635 0.60 -0.8
193,611 + Ac3H11_3635 0.60 -0.8
193,611 + Ac3H11_3635 0.60 +0.6
193,611 + Ac3H11_3635 0.60 -0.2
193,611 + Ac3H11_3635 0.60 -1.0
193,611 + Ac3H11_3635 0.60 -0.3
193,612 - Ac3H11_3635 0.60 +0.2
193,612 - Ac3H11_3635 0.60 -0.3
193,612 - Ac3H11_3635 0.60 -0.4
193,612 - Ac3H11_3635 0.60 +0.9
193,675 - Ac3H11_3635 0.64 +0.2
193,722 + Ac3H11_3635 0.66 -0.3
193,722 + Ac3H11_3635 0.66 +0.6
193,722 + Ac3H11_3635 0.66 -0.3
193,722 + Ac3H11_3635 0.66 +0.7
193,723 - Ac3H11_3635 0.66 +1.5
193,723 - Ac3H11_3635 0.66 -0.0
193,723 - Ac3H11_3635 0.66 -1.8
193,723 - Ac3H11_3635 0.66 -1.0
193,794 + Ac3H11_3635 0.70 +1.1
193,795 - Ac3H11_3635 0.71 +0.6
193,853 + Ac3H11_3635 0.74 +0.2
193,980 + Ac3H11_3635 0.81 +0.7
193,980 + Ac3H11_3635 0.81 +0.8
193,981 - Ac3H11_3635 0.81 +1.1
194,004 + Ac3H11_3635 0.83 +0.6
194,004 + Ac3H11_3635 0.83 -0.8
194,091 - Ac3H11_3635 0.88 +0.2
194,163 + -0.5
194,163 + +0.3
194,163 + -0.2
194,163 + +0.3
194,163 + +0.2
194,164 - +0.5
194,164 - +0.9
194,673 + Ac3H11_3636 0.20 +1.4
194,673 + Ac3H11_3636 0.20 -1.2
194,674 - Ac3H11_3636 0.20 -0.7
194,674 - Ac3H11_3636 0.20 -0.7
194,780 + Ac3H11_3636 0.27 +0.8
195,008 + Ac3H11_3636 0.42 +0.4
195,008 + Ac3H11_3636 0.42 +0.7
195,008 + Ac3H11_3636 0.42 -0.3
195,009 - Ac3H11_3636 0.42 -0.4
195,009 - Ac3H11_3636 0.42 -0.2
195,009 - Ac3H11_3636 0.42 -0.2
195,009 - Ac3H11_3636 0.42 +0.1
195,009 - Ac3H11_3636 0.42 -0.5
195,009 - Ac3H11_3636 0.42 +0.3
195,009 - Ac3H11_3636 0.42 +0.1
195,081 + Ac3H11_3636 0.47 +0.3
195,082 - Ac3H11_3636 0.47 -0.6
195,093 - Ac3H11_3636 0.48 +0.7
195,093 - Ac3H11_3636 0.48 -2.3
195,152 + Ac3H11_3636 0.52 -0.2
195,152 + Ac3H11_3636 0.52 -0.6
195,153 - Ac3H11_3636 0.52 -0.9
195,458 + Ac3H11_3636 0.73 -0.9
195,458 + Ac3H11_3636 0.73 +0.6
195,458 + Ac3H11_3636 0.73 +0.8
195,458 + Ac3H11_3636 0.73 +0.8
195,458 + Ac3H11_3636 0.73 +0.2
195,458 + Ac3H11_3636 0.73 -0.0
195,458 + Ac3H11_3636 0.73 +0.5
195,459 - Ac3H11_3636 0.73 +0.0
195,459 - Ac3H11_3636 0.73 +0.2
195,459 - Ac3H11_3636 0.73 -0.5
195,459 - Ac3H11_3636 0.73 +0.5
195,459 - Ac3H11_3636 0.73 +0.3
195,459 - Ac3H11_3636 0.73 +1.2
195,459 - Ac3H11_3636 0.73 +0.2
195,459 - Ac3H11_3636 0.73 +0.9
195,587 + Ac3H11_3636 0.82 +0.5
195,587 + Ac3H11_3636 0.82 -0.1
195,587 + Ac3H11_3636 0.82 -0.0
195,588 - Ac3H11_3636 0.82 -0.7
195,588 - Ac3H11_3636 0.82 +1.9
195,588 - Ac3H11_3636 0.82 -0.0
195,588 - Ac3H11_3636 0.82 +0.5
195,588 - Ac3H11_3636 0.82 -0.1
195,855 + +1.3
195,889 + +0.6
195,994 + Ac3H11_3637 0.17 -0.9
195,994 + Ac3H11_3637 0.17 +0.6
195,994 + Ac3H11_3637 0.17 -0.3
195,994 + Ac3H11_3637 0.17 -0.5
195,995 - Ac3H11_3637 0.17 -0.6
195,995 - Ac3H11_3637 0.17 +0.7
195,995 - Ac3H11_3637 0.17 -0.5
196,183 + Ac3H11_3637 0.40 -0.0
196,183 + Ac3H11_3637 0.40 -0.9
196,183 + Ac3H11_3637 0.40 +0.1
196,184 - Ac3H11_3637 0.40 +0.6
196,192 + Ac3H11_3637 0.41 +1.3
196,192 + Ac3H11_3637 0.41 +0.1
196,192 + Ac3H11_3637 0.41 -0.1
196,192 + Ac3H11_3637 0.41 -0.5
196,193 - Ac3H11_3637 0.41 -3.2
196,193 - Ac3H11_3637 0.41 +0.7
196,318 + Ac3H11_3637 0.57 +0.2
196,318 + Ac3H11_3637 0.57 -0.8
196,319 - Ac3H11_3637 0.57 +0.8
196,327 + Ac3H11_3637 0.58 +1.1
196,327 + Ac3H11_3637 0.58 -1.5
196,327 + Ac3H11_3637 0.58 -1.1
196,327 + Ac3H11_3637 0.58 -1.1
196,328 - Ac3H11_3637 0.58 -1.7
196,328 - Ac3H11_3637 0.58 -0.2
196,328 - Ac3H11_3637 0.58 -1.2
196,328 - Ac3H11_3637 0.58 -2.9
196,328 - Ac3H11_3637 0.58 +0.5
196,399 + Ac3H11_3637 0.67 +0.2
196,399 + Ac3H11_3637 0.67 -0.5
196,400 - Ac3H11_3637 0.67 -0.1
196,400 - Ac3H11_3637 0.67 +0.6
196,400 - Ac3H11_3637 0.67 +0.3
196,400 - Ac3H11_3637 0.67 +1.5
196,400 - Ac3H11_3637 0.67 -1.8
196,405 + Ac3H11_3637 0.67 -1.1
196,405 + Ac3H11_3637 0.67 +0.9
196,405 + Ac3H11_3637 0.67 +1.3
196,405 + Ac3H11_3637 0.67 +1.0
196,405 + Ac3H11_3637 0.67 -0.0
196,406 - Ac3H11_3637 0.67 +0.3
196,406 - Ac3H11_3637 0.67 -0.3
196,406 - Ac3H11_3637 0.67 -0.3
196,406 - Ac3H11_3637 0.67 +1.4
196,406 - Ac3H11_3637 0.67 -0.4
196,610 - +0.9
196,610 - -1.4
196,610 - -1.6
196,627 + +0.2
196,627 + -0.2
196,628 - +0.1
196,628 - -0.4
196,628 - -1.2
196,693 - +0.1
196,709 + +0.5
196,710 - -0.5
196,710 - +0.5
196,710 - +0.4
196,805 - -0.9
196,805 - -0.6
196,806 + +0.4
196,806 + -0.6
196,806 + +0.6
196,806 + +0.5
196,806 + -0.7
196,807 - -0.3
196,807 - -0.3
196,807 - +0.2
196,807 - +0.5
196,807 - -1.7
196,807 - -0.2

Or see this region's nucleotide sequence