Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3612

Experiment: Fusidic 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3611 and Ac3H11_3612 are separated by 10 nucleotidesAc3H11_3612 and Ac3H11_3613 overlap by 4 nucleotides Ac3H11_3611 - Monooxygenase, flavin-binding family, at 163,462 to 164,796 _3611 Ac3H11_3612 - Na(+) dependent transporter,Sodium Bile acid symporter family, at 164,807 to 165,742 _3612 Ac3H11_3613 - UDP-glucose 4-epimerase (EC 5.1.3.2), at 165,739 to 166,749 _3613 Position (kb) 164 165 166Strain fitness (log2 ratio) -2 -1 0 1at 163.997 kb on - strand, within Ac3H11_3611at 164.086 kb on + strand, within Ac3H11_3611at 164.086 kb on + strand, within Ac3H11_3611at 164.087 kb on - strand, within Ac3H11_3611at 164.122 kb on + strand, within Ac3H11_3611at 164.125 kb on + strand, within Ac3H11_3611at 164.125 kb on + strand, within Ac3H11_3611at 164.125 kb on + strand, within Ac3H11_3611at 164.125 kb on + strand, within Ac3H11_3611at 164.125 kb on + strand, within Ac3H11_3611at 164.126 kb on - strand, within Ac3H11_3611at 164.140 kb on + strand, within Ac3H11_3611at 164.140 kb on + strand, within Ac3H11_3611at 164.140 kb on + strand, within Ac3H11_3611at 164.140 kb on + strand, within Ac3H11_3611at 164.140 kb on + strand, within Ac3H11_3611at 164.140 kb on + strand, within Ac3H11_3611at 164.141 kb on - strand, within Ac3H11_3611at 164.141 kb on - strandat 164.141 kb on - strand, within Ac3H11_3611at 164.276 kb on - strand, within Ac3H11_3611at 164.284 kb on + strand, within Ac3H11_3611at 164.285 kb on - strand, within Ac3H11_3611at 164.285 kb on - strand, within Ac3H11_3611at 164.285 kb on - strand, within Ac3H11_3611at 164.285 kb on - strand, within Ac3H11_3611at 164.413 kb on + strand, within Ac3H11_3611at 164.413 kb on + strand, within Ac3H11_3611at 164.414 kb on - strand, within Ac3H11_3611at 164.441 kb on - strand, within Ac3H11_3611at 164.452 kb on + strand, within Ac3H11_3611at 164.452 kb on + strand, within Ac3H11_3611at 164.453 kb on - strand, within Ac3H11_3611at 164.507 kb on - strand, within Ac3H11_3611at 164.507 kb on - strand, within Ac3H11_3611at 164.507 kb on - strand, within Ac3H11_3611at 164.591 kb on - strand, within Ac3H11_3611at 164.711 kb on - strandat 164.734 kb on + strandat 164.735 kb on - strandat 164.737 kb on + strandat 164.737 kb on + strandat 164.737 kb on + strandat 164.738 kb on - strandat 164.738 kb on - strandat 164.756 kb on - strandat 164.826 kb on + strandat 164.826 kb on + strandat 164.827 kb on - strandat 165.036 kb on + strand, within Ac3H11_3612at 165.037 kb on - strand, within Ac3H11_3612at 165.037 kb on - strand, within Ac3H11_3612at 165.037 kb on - strand, within Ac3H11_3612at 165.432 kb on - strand, within Ac3H11_3612at 165.432 kb on - strand, within Ac3H11_3612at 165.432 kb on - strand, within Ac3H11_3612at 165.432 kb on - strand, within Ac3H11_3612at 165.525 kb on - strand, within Ac3H11_3612at 165.901 kb on + strand, within Ac3H11_3613at 165.902 kb on - strand, within Ac3H11_3613at 166.024 kb on + strand, within Ac3H11_3613at 166.189 kb on + strand, within Ac3H11_3613

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.001 mg/ml
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163,997 - Ac3H11_3611 0.40 -0.7
164,086 + Ac3H11_3611 0.47 -0.3
164,086 + Ac3H11_3611 0.47 -0.1
164,087 - Ac3H11_3611 0.47 +0.4
164,122 + Ac3H11_3611 0.49 +0.9
164,125 + Ac3H11_3611 0.50 -0.4
164,125 + Ac3H11_3611 0.50 -2.1
164,125 + Ac3H11_3611 0.50 -0.3
164,125 + Ac3H11_3611 0.50 +0.3
164,125 + Ac3H11_3611 0.50 -0.8
164,126 - Ac3H11_3611 0.50 -0.1
164,140 + Ac3H11_3611 0.51 -0.7
164,140 + Ac3H11_3611 0.51 +0.7
164,140 + Ac3H11_3611 0.51 +0.5
164,140 + Ac3H11_3611 0.51 +0.3
164,140 + Ac3H11_3611 0.51 +0.5
164,140 + Ac3H11_3611 0.51 -0.6
164,141 - Ac3H11_3611 0.51 +0.7
164,141 - +0.5
164,141 - Ac3H11_3611 0.51 -0.2
164,276 - Ac3H11_3611 0.61 -0.5
164,284 + Ac3H11_3611 0.62 +0.4
164,285 - Ac3H11_3611 0.62 +0.2
164,285 - Ac3H11_3611 0.62 -0.4
164,285 - Ac3H11_3611 0.62 +1.0
164,285 - Ac3H11_3611 0.62 -1.3
164,413 + Ac3H11_3611 0.71 -1.5
164,413 + Ac3H11_3611 0.71 +0.7
164,414 - Ac3H11_3611 0.71 -0.4
164,441 - Ac3H11_3611 0.73 +0.0
164,452 + Ac3H11_3611 0.74 +0.3
164,452 + Ac3H11_3611 0.74 +0.2
164,453 - Ac3H11_3611 0.74 +0.5
164,507 - Ac3H11_3611 0.78 +0.0
164,507 - Ac3H11_3611 0.78 +0.6
164,507 - Ac3H11_3611 0.78 -0.6
164,591 - Ac3H11_3611 0.85 -1.5
164,711 - -0.2
164,734 + -1.1
164,735 - -0.3
164,737 + +0.2
164,737 + -0.6
164,737 + +0.5
164,738 - +0.7
164,738 - -0.4
164,756 - -2.4
164,826 + +1.4
164,826 + -0.2
164,827 - +0.1
165,036 + Ac3H11_3612 0.24 +0.7
165,037 - Ac3H11_3612 0.25 +0.6
165,037 - Ac3H11_3612 0.25 -0.3
165,037 - Ac3H11_3612 0.25 -1.3
165,432 - Ac3H11_3612 0.67 +0.5
165,432 - Ac3H11_3612 0.67 -0.3
165,432 - Ac3H11_3612 0.67 -1.1
165,432 - Ac3H11_3612 0.67 -0.0
165,525 - Ac3H11_3612 0.77 -0.8
165,901 + Ac3H11_3613 0.16 -0.2
165,902 - Ac3H11_3613 0.16 -0.4
166,024 + Ac3H11_3613 0.28 +0.4
166,189 + Ac3H11_3613 0.45 +0.6

Or see this region's nucleotide sequence