Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3232

Experiment: Fusidic 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3230 and Ac3H11_3231 are separated by 63 nucleotidesAc3H11_3231 and Ac3H11_3232 are separated by 109 nucleotidesAc3H11_3232 and Ac3H11_3233 overlap by 48 nucleotidesAc3H11_3233 and Ac3H11_3234 are separated by 439 nucleotides Ac3H11_3230 - Gluconate utilization system Gnt-I transcriptional repressor, at 136,876 to 137,901 _3230 Ac3H11_3231 - hypothetical protein, at 137,965 to 138,219 _3231 Ac3H11_3232 - Aerotaxis sensor receptor protein, at 138,329 to 139,981 _3232 Ac3H11_3233 - hypothetical protein, at 139,934 to 140,053 _3233 Ac3H11_3234 - Nitrate/nitrite transporter, at 140,493 to 141,758 _3234 Position (kb) 138 139 140Strain fitness (log2 ratio) -2 -1 0 1 2at 138.004 kb on - strand, within Ac3H11_3231at 138.086 kb on - strand, within Ac3H11_3231at 138.951 kb on - strand, within Ac3H11_3232at 139.344 kb on + strand, within Ac3H11_3232at 139.344 kb on + strand, within Ac3H11_3232at 139.345 kb on - strand, within Ac3H11_3232at 139.345 kb on - strand, within Ac3H11_3232at 139.483 kb on + strand, within Ac3H11_3232at 139.484 kb on - strand, within Ac3H11_3232at 139.599 kb on + strand, within Ac3H11_3232at 139.599 kb on + strand, within Ac3H11_3232at 139.600 kb on - strand, within Ac3H11_3232at 139.600 kb on - strand, within Ac3H11_3232at 139.656 kb on + strand, within Ac3H11_3232at 139.656 kb on + strand, within Ac3H11_3232at 139.656 kb on + strand, within Ac3H11_3232at 139.656 kb on + strand, within Ac3H11_3232at 139.657 kb on - strand, within Ac3H11_3232at 139.657 kb on - strand, within Ac3H11_3232at 139.657 kb on - strand, within Ac3H11_3232at 139.657 kb on - strand, within Ac3H11_3232at 139.657 kb on - strand, within Ac3H11_3232at 139.711 kb on - strand, within Ac3H11_3232at 139.893 kb on + strandat 139.893 kb on + strandat 139.894 kb on - strandat 139.953 kb on + strandat 139.953 kb on + strandat 139.953 kb on + strandat 139.954 kb on - strandat 139.954 kb on - strandat 139.954 kb on - strandat 139.954 kb on - strandat 139.954 kb on - strandat 139.954 kb on - strandat 139.954 kb on - strandat 139.954 kb on - strandat 140.000 kb on - strand, within Ac3H11_3233at 140.049 kb on + strandat 140.049 kb on + strandat 140.049 kb on + strandat 140.050 kb on - strandat 140.050 kb on - strandat 140.050 kb on - strandat 140.051 kb on + strandat 140.052 kb on - strandat 140.052 kb on - strandat 140.079 kb on + strandat 140.135 kb on - strandat 140.272 kb on - strandat 140.335 kb on + strandat 140.335 kb on + strandat 140.335 kb on + strandat 140.335 kb on + strandat 140.336 kb on - strandat 140.336 kb on - strandat 140.336 kb on - strandat 140.456 kb on - strandat 140.520 kb on + strandat 140.520 kb on + strandat 140.520 kb on + strandat 140.520 kb on + strandat 140.521 kb on - strandat 140.521 kb on - strandat 140.521 kb on - strandat 140.607 kb on + strandat 140.607 kb on + strandat 140.608 kb on - strandat 140.767 kb on - strand, within Ac3H11_3234at 140.767 kb on - strand, within Ac3H11_3234at 140.767 kb on - strand, within Ac3H11_3234at 140.807 kb on + strand, within Ac3H11_3234at 140.827 kb on - strand, within Ac3H11_3234at 140.832 kb on + strand, within Ac3H11_3234at 140.832 kb on + strand, within Ac3H11_3234at 140.832 kb on + strand, within Ac3H11_3234at 140.833 kb on - strand, within Ac3H11_3234at 140.946 kb on + strand, within Ac3H11_3234at 140.947 kb on - strand, within Ac3H11_3234at 140.947 kb on - strand, within Ac3H11_3234at 140.947 kb on - strand, within Ac3H11_3234

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.001 mg/ml
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138,004 - Ac3H11_3231 0.15 +0.0
138,086 - Ac3H11_3231 0.47 -0.4
138,951 - Ac3H11_3232 0.38 -0.2
139,344 + Ac3H11_3232 0.61 +1.9
139,344 + Ac3H11_3232 0.61 +0.6
139,345 - Ac3H11_3232 0.61 -0.1
139,345 - Ac3H11_3232 0.61 +0.4
139,483 + Ac3H11_3232 0.70 -0.9
139,484 - Ac3H11_3232 0.70 +0.9
139,599 + Ac3H11_3232 0.77 +0.6
139,599 + Ac3H11_3232 0.77 -1.7
139,600 - Ac3H11_3232 0.77 +0.6
139,600 - Ac3H11_3232 0.77 -1.0
139,656 + Ac3H11_3232 0.80 -0.3
139,656 + Ac3H11_3232 0.80 +0.1
139,656 + Ac3H11_3232 0.80 +0.2
139,656 + Ac3H11_3232 0.80 +0.7
139,657 - Ac3H11_3232 0.80 +0.7
139,657 - Ac3H11_3232 0.80 +0.6
139,657 - Ac3H11_3232 0.80 +0.6
139,657 - Ac3H11_3232 0.80 +0.2
139,657 - Ac3H11_3232 0.80 -0.5
139,711 - Ac3H11_3232 0.84 -0.3
139,893 + -0.5
139,893 + -0.8
139,894 - +1.9
139,953 + -0.4
139,953 + +1.4
139,953 + -1.0
139,954 - +0.4
139,954 - +0.1
139,954 - -0.1
139,954 - -0.6
139,954 - -0.3
139,954 - +0.3
139,954 - -0.6
139,954 - +0.5
140,000 - Ac3H11_3233 0.55 -0.1
140,049 + +0.5
140,049 + +0.4
140,049 + +0.4
140,050 - -1.8
140,050 - -1.0
140,050 - +1.2
140,051 + -0.4
140,052 - -0.1
140,052 - +1.1
140,079 + -1.4
140,135 - -0.2
140,272 - +1.3
140,335 + +0.0
140,335 + +0.7
140,335 + -0.8
140,335 + +0.4
140,336 - +0.1
140,336 - +0.2
140,336 - +0.5
140,456 - -0.5
140,520 + -2.1
140,520 + -0.1
140,520 + +0.7
140,520 + -1.2
140,521 - +0.4
140,521 - +0.0
140,521 - -0.2
140,607 + +1.1
140,607 + -0.0
140,608 - -0.4
140,767 - Ac3H11_3234 0.22 -0.4
140,767 - Ac3H11_3234 0.22 +0.2
140,767 - Ac3H11_3234 0.22 +0.3
140,807 + Ac3H11_3234 0.25 +0.1
140,827 - Ac3H11_3234 0.26 +1.2
140,832 + Ac3H11_3234 0.27 +1.2
140,832 + Ac3H11_3234 0.27 +0.1
140,832 + Ac3H11_3234 0.27 -0.1
140,833 - Ac3H11_3234 0.27 +0.3
140,946 + Ac3H11_3234 0.36 +0.8
140,947 - Ac3H11_3234 0.36 -0.1
140,947 - Ac3H11_3234 0.36 -0.3
140,947 - Ac3H11_3234 0.36 +1.2

Or see this region's nucleotide sequence