Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3103

Experiment: Fusidic 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3102 and Ac3H11_3103 are separated by 439 nucleotidesAc3H11_3103 and Ac3H11_3104 are separated by 36 nucleotides Ac3H11_3102 - Lipoprotein, putative, at 1,357 to 1,980 _3102 Ac3H11_3103 - putative nuclease, at 2,420 to 2,857 _3103 Ac3H11_3104 - putative flagellin, at 2,894 to 4,597 _3104 Position (kb) 2 3Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1.425 kb on - strand, within Ac3H11_3102at 1.425 kb on - strand, within Ac3H11_3102at 1.556 kb on + strand, within Ac3H11_3102at 1.556 kb on + strand, within Ac3H11_3102at 1.556 kb on + strand, within Ac3H11_3102at 1.557 kb on - strand, within Ac3H11_3102at 1.557 kb on - strand, within Ac3H11_3102at 1.557 kb on - strand, within Ac3H11_3102at 1.557 kb on - strand, within Ac3H11_3102at 1.715 kb on + strand, within Ac3H11_3102at 1.716 kb on - strand, within Ac3H11_3102at 1.716 kb on - strand, within Ac3H11_3102at 1.716 kb on - strand, within Ac3H11_3102at 2.136 kb on + strandat 2.136 kb on + strandat 2.136 kb on + strandat 2.137 kb on - strandat 2.137 kb on - strandat 2.137 kb on - strandat 2.139 kb on - strandat 2.167 kb on + strandat 2.225 kb on + strandat 2.299 kb on + strandat 2.353 kb on - strandat 2.642 kb on + strand, within Ac3H11_3103at 2.643 kb on - strand, within Ac3H11_3103at 2.643 kb on - strand, within Ac3H11_3103at 2.643 kb on - strand, within Ac3H11_3103at 2.643 kb on - strand, within Ac3H11_3103at 2.664 kb on + strand, within Ac3H11_3103at 2.664 kb on + strand, within Ac3H11_3103at 2.664 kb on + strand, within Ac3H11_3103at 2.664 kb on + strand, within Ac3H11_3103at 2.665 kb on - strand, within Ac3H11_3103at 2.665 kb on - strand, within Ac3H11_3103at 2.665 kb on - strand, within Ac3H11_3103at 2.723 kb on + strand, within Ac3H11_3103at 2.723 kb on + strand, within Ac3H11_3103at 2.723 kb on + strand, within Ac3H11_3103at 2.723 kb on + strand, within Ac3H11_3103at 2.724 kb on - strand, within Ac3H11_3103at 3.133 kb on - strand, within Ac3H11_3104at 3.319 kb on - strand, within Ac3H11_3104at 3.582 kb on + strand, within Ac3H11_3104at 3.582 kb on + strand, within Ac3H11_3104at 3.582 kb on + strand, within Ac3H11_3104at 3.582 kb on + strand, within Ac3H11_3104at 3.582 kb on + strand, within Ac3H11_3104at 3.582 kb on + strand, within Ac3H11_3104at 3.582 kb on + strand, within Ac3H11_3104at 3.583 kb on - strand, within Ac3H11_3104at 3.583 kb on - strand, within Ac3H11_3104at 3.583 kb on - strand, within Ac3H11_3104at 3.639 kb on + strand, within Ac3H11_3104at 3.640 kb on - strand, within Ac3H11_3104at 3.654 kb on + strand, within Ac3H11_3104at 3.655 kb on - strand, within Ac3H11_3104at 3.666 kb on + strand, within Ac3H11_3104at 3.666 kb on + strand, within Ac3H11_3104at 3.666 kb on + strand, within Ac3H11_3104at 3.667 kb on - strand, within Ac3H11_3104at 3.667 kb on - strand, within Ac3H11_3104at 3.680 kb on - strand, within Ac3H11_3104at 3.680 kb on - strand, within Ac3H11_3104

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.001 mg/ml
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1,425 - Ac3H11_3102 0.11 +0.4
1,425 - Ac3H11_3102 0.11 -1.2
1,556 + Ac3H11_3102 0.32 -2.8
1,556 + Ac3H11_3102 0.32 -1.1
1,556 + Ac3H11_3102 0.32 -1.5
1,557 - Ac3H11_3102 0.32 -1.3
1,557 - Ac3H11_3102 0.32 -0.7
1,557 - Ac3H11_3102 0.32 +1.5
1,557 - Ac3H11_3102 0.32 -0.8
1,715 + Ac3H11_3102 0.57 -0.3
1,716 - Ac3H11_3102 0.58 -1.8
1,716 - Ac3H11_3102 0.58 -1.3
1,716 - Ac3H11_3102 0.58 +0.4
2,136 + -0.0
2,136 + -0.8
2,136 + +0.3
2,137 - -0.0
2,137 - +0.0
2,137 - -0.6
2,139 - -0.5
2,167 + +0.7
2,225 + -0.1
2,299 + +0.2
2,353 - +0.8
2,642 + Ac3H11_3103 0.51 -0.5
2,643 - Ac3H11_3103 0.51 +0.1
2,643 - Ac3H11_3103 0.51 +0.9
2,643 - Ac3H11_3103 0.51 +0.2
2,643 - Ac3H11_3103 0.51 +1.5
2,664 + Ac3H11_3103 0.56 -0.1
2,664 + Ac3H11_3103 0.56 +0.0
2,664 + Ac3H11_3103 0.56 +0.9
2,664 + Ac3H11_3103 0.56 -0.2
2,665 - Ac3H11_3103 0.56 +1.0
2,665 - Ac3H11_3103 0.56 -0.7
2,665 - Ac3H11_3103 0.56 -0.0
2,723 + Ac3H11_3103 0.69 -0.8
2,723 + Ac3H11_3103 0.69 -0.0
2,723 + Ac3H11_3103 0.69 -1.0
2,723 + Ac3H11_3103 0.69 -0.1
2,724 - Ac3H11_3103 0.69 -1.1
3,133 - Ac3H11_3104 0.14 -1.3
3,319 - Ac3H11_3104 0.25 +1.2
3,582 + Ac3H11_3104 0.40 +0.7
3,582 + Ac3H11_3104 0.40 -0.0
3,582 + Ac3H11_3104 0.40 +0.1
3,582 + Ac3H11_3104 0.40 -1.3
3,582 + Ac3H11_3104 0.40 +0.2
3,582 + Ac3H11_3104 0.40 -0.9
3,582 + Ac3H11_3104 0.40 -0.3
3,583 - Ac3H11_3104 0.40 +1.0
3,583 - Ac3H11_3104 0.40 -0.9
3,583 - Ac3H11_3104 0.40 +0.4
3,639 + Ac3H11_3104 0.44 +0.6
3,640 - Ac3H11_3104 0.44 -0.8
3,654 + Ac3H11_3104 0.45 -0.5
3,655 - Ac3H11_3104 0.45 +0.2
3,666 + Ac3H11_3104 0.45 +0.8
3,666 + Ac3H11_3104 0.45 -2.0
3,666 + Ac3H11_3104 0.45 +0.2
3,667 - Ac3H11_3104 0.45 +0.9
3,667 - Ac3H11_3104 0.45 +2.5
3,680 - Ac3H11_3104 0.46 +0.1
3,680 - Ac3H11_3104 0.46 +0.4

Or see this region's nucleotide sequence