Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2931

Experiment: Fusidic 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2930 and Ac3H11_2931 are separated by 192 nucleotidesAc3H11_2931 and Ac3H11_2932 are separated by 90 nucleotides Ac3H11_2930 - putative membrane protein, at 1,247,829 to 1,249,085 _2930 Ac3H11_2931 - putative transmembrane protein, at 1,249,278 to 1,249,613 _2931 Ac3H11_2932 - Ribonuclease BN (EC 3.1.-.-), at 1,249,704 to 1,250,966 _2932 Position (kb) 1249 1250Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1248.481 kb on + strand, within Ac3H11_2930at 1248.673 kb on + strand, within Ac3H11_2930at 1248.673 kb on + strand, within Ac3H11_2930at 1248.674 kb on - strand, within Ac3H11_2930at 1248.674 kb on - strand, within Ac3H11_2930at 1248.674 kb on - strand, within Ac3H11_2930at 1248.842 kb on - strand, within Ac3H11_2930at 1248.842 kb on - strand, within Ac3H11_2930at 1248.934 kb on + strand, within Ac3H11_2930at 1248.934 kb on + strand, within Ac3H11_2930at 1248.935 kb on - strand, within Ac3H11_2930at 1248.935 kb on - strand, within Ac3H11_2930at 1248.935 kb on - strand, within Ac3H11_2930at 1248.935 kb on - strand, within Ac3H11_2930at 1249.162 kb on + strandat 1249.163 kb on - strandat 1249.163 kb on - strandat 1249.163 kb on - strandat 1249.164 kb on + strandat 1249.164 kb on + strandat 1249.164 kb on + strandat 1249.164 kb on + strandat 1249.165 kb on - strandat 1249.243 kb on + strandat 1249.243 kb on + strandat 1249.243 kb on + strandat 1249.244 kb on - strandat 1249.244 kb on - strandat 1249.244 kb on - strandat 1249.244 kb on - strandat 1249.244 kb on - strandat 1249.244 kb on - strandat 1249.244 kb on - strandat 1249.341 kb on + strand, within Ac3H11_2931at 1249.342 kb on - strand, within Ac3H11_2931at 1249.350 kb on + strand, within Ac3H11_2931at 1249.350 kb on + strand, within Ac3H11_2931at 1249.350 kb on + strand, within Ac3H11_2931at 1249.350 kb on + strand, within Ac3H11_2931at 1249.351 kb on - strand, within Ac3H11_2931at 1249.351 kb on - strand, within Ac3H11_2931at 1249.351 kb on - strand, within Ac3H11_2931at 1249.351 kb on - strand, within Ac3H11_2931at 1249.351 kb on - strand, within Ac3H11_2931at 1249.351 kb on - strand, within Ac3H11_2931at 1249.351 kb on - strand, within Ac3H11_2931at 1249.456 kb on - strand, within Ac3H11_2931at 1249.464 kb on + strand, within Ac3H11_2931at 1249.465 kb on - strand, within Ac3H11_2931at 1249.465 kb on - strand, within Ac3H11_2931at 1249.465 kb on - strand, within Ac3H11_2931at 1249.551 kb on + strand, within Ac3H11_2931at 1249.861 kb on + strand, within Ac3H11_2932at 1250.123 kb on - strand, within Ac3H11_2932at 1250.123 kb on - strand, within Ac3H11_2932at 1250.123 kb on - strand, within Ac3H11_2932at 1250.167 kb on + strand, within Ac3H11_2932at 1250.167 kb on + strand, within Ac3H11_2932at 1250.167 kb on + strand, within Ac3H11_2932at 1250.167 kb on + strand, within Ac3H11_2932at 1250.168 kb on - strand, within Ac3H11_2932at 1250.168 kb on - strand, within Ac3H11_2932at 1250.168 kb on - strand, within Ac3H11_2932at 1250.168 kb on - strand, within Ac3H11_2932at 1250.168 kb on - strand, within Ac3H11_2932at 1250.210 kb on - strand, within Ac3H11_2932at 1250.221 kb on + strand, within Ac3H11_2932at 1250.221 kb on + strand, within Ac3H11_2932at 1250.243 kb on - strand, within Ac3H11_2932at 1250.243 kb on - strand, within Ac3H11_2932at 1250.338 kb on + strand, within Ac3H11_2932at 1250.338 kb on + strand, within Ac3H11_2932at 1250.338 kb on + strand, within Ac3H11_2932at 1250.338 kb on + strand, within Ac3H11_2932at 1250.338 kb on + strand, within Ac3H11_2932at 1250.339 kb on - strand, within Ac3H11_2932at 1250.339 kb on - strand, within Ac3H11_2932at 1250.344 kb on + strand, within Ac3H11_2932at 1250.344 kb on + strand, within Ac3H11_2932at 1250.345 kb on - strand, within Ac3H11_2932at 1250.452 kb on + strand, within Ac3H11_2932at 1250.452 kb on + strand, within Ac3H11_2932at 1250.452 kb on + strand, within Ac3H11_2932at 1250.453 kb on - strand, within Ac3H11_2932at 1250.453 kb on - strand, within Ac3H11_2932at 1250.512 kb on + strand, within Ac3H11_2932at 1250.513 kb on - strand, within Ac3H11_2932at 1250.575 kb on - strand, within Ac3H11_2932

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.001 mg/ml
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1,248,481 + Ac3H11_2930 0.52 -0.8
1,248,673 + Ac3H11_2930 0.67 +0.0
1,248,673 + Ac3H11_2930 0.67 -2.6
1,248,674 - Ac3H11_2930 0.67 -0.4
1,248,674 - Ac3H11_2930 0.67 +0.9
1,248,674 - Ac3H11_2930 0.67 -0.6
1,248,842 - Ac3H11_2930 0.81 -0.8
1,248,842 - Ac3H11_2930 0.81 +0.6
1,248,934 + Ac3H11_2930 0.88 +0.2
1,248,934 + Ac3H11_2930 0.88 +0.9
1,248,935 - Ac3H11_2930 0.88 +0.2
1,248,935 - Ac3H11_2930 0.88 +0.4
1,248,935 - Ac3H11_2930 0.88 +2.4
1,248,935 - Ac3H11_2930 0.88 +0.3
1,249,162 + +0.4
1,249,163 - -0.2
1,249,163 - -2.7
1,249,163 - -2.0
1,249,164 + +0.3
1,249,164 + +0.1
1,249,164 + -2.7
1,249,164 + +1.5
1,249,165 - -1.5
1,249,243 + -0.6
1,249,243 + +0.4
1,249,243 + -1.2
1,249,244 - +0.5
1,249,244 - -0.1
1,249,244 - -0.4
1,249,244 - +0.1
1,249,244 - +1.2
1,249,244 - +0.8
1,249,244 - -1.1
1,249,341 + Ac3H11_2931 0.19 -0.8
1,249,342 - Ac3H11_2931 0.19 +1.0
1,249,350 + Ac3H11_2931 0.21 -1.2
1,249,350 + Ac3H11_2931 0.21 +0.7
1,249,350 + Ac3H11_2931 0.21 +0.1
1,249,350 + Ac3H11_2931 0.21 +0.7
1,249,351 - Ac3H11_2931 0.22 +1.1
1,249,351 - Ac3H11_2931 0.22 +0.0
1,249,351 - Ac3H11_2931 0.22 +0.5
1,249,351 - Ac3H11_2931 0.22 +0.3
1,249,351 - Ac3H11_2931 0.22 -1.0
1,249,351 - Ac3H11_2931 0.22 +0.5
1,249,351 - Ac3H11_2931 0.22 +0.5
1,249,456 - Ac3H11_2931 0.53 -0.1
1,249,464 + Ac3H11_2931 0.55 -1.2
1,249,465 - Ac3H11_2931 0.56 -0.8
1,249,465 - Ac3H11_2931 0.56 -0.5
1,249,465 - Ac3H11_2931 0.56 -1.9
1,249,551 + Ac3H11_2931 0.81 +0.9
1,249,861 + Ac3H11_2932 0.12 -0.1
1,250,123 - Ac3H11_2932 0.33 +0.3
1,250,123 - Ac3H11_2932 0.33 -2.5
1,250,123 - Ac3H11_2932 0.33 +0.6
1,250,167 + Ac3H11_2932 0.37 -0.7
1,250,167 + Ac3H11_2932 0.37 -0.5
1,250,167 + Ac3H11_2932 0.37 -0.8
1,250,167 + Ac3H11_2932 0.37 -2.4
1,250,168 - Ac3H11_2932 0.37 +0.2
1,250,168 - Ac3H11_2932 0.37 -0.4
1,250,168 - Ac3H11_2932 0.37 +0.4
1,250,168 - Ac3H11_2932 0.37 +0.4
1,250,168 - Ac3H11_2932 0.37 +1.4
1,250,210 - Ac3H11_2932 0.40 +0.5
1,250,221 + Ac3H11_2932 0.41 -1.1
1,250,221 + Ac3H11_2932 0.41 +1.4
1,250,243 - Ac3H11_2932 0.43 -0.4
1,250,243 - Ac3H11_2932 0.43 +0.5
1,250,338 + Ac3H11_2932 0.50 +0.1
1,250,338 + Ac3H11_2932 0.50 +0.2
1,250,338 + Ac3H11_2932 0.50 -3.2
1,250,338 + Ac3H11_2932 0.50 -0.7
1,250,338 + Ac3H11_2932 0.50 +0.5
1,250,339 - Ac3H11_2932 0.50 +0.0
1,250,339 - Ac3H11_2932 0.50 +0.1
1,250,344 + Ac3H11_2932 0.51 +1.1
1,250,344 + Ac3H11_2932 0.51 -0.0
1,250,345 - Ac3H11_2932 0.51 -0.1
1,250,452 + Ac3H11_2932 0.59 +0.4
1,250,452 + Ac3H11_2932 0.59 -0.7
1,250,452 + Ac3H11_2932 0.59 -1.3
1,250,453 - Ac3H11_2932 0.59 +0.4
1,250,453 - Ac3H11_2932 0.59 +0.2
1,250,512 + Ac3H11_2932 0.64 -0.7
1,250,513 - Ac3H11_2932 0.64 +0.2
1,250,575 - Ac3H11_2932 0.69 -0.3

Or see this region's nucleotide sequence