Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2193

Experiment: Fusidic 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2192 and Ac3H11_2193 are separated by 289 nucleotidesAc3H11_2193 and Ac3H11_2194 are separated by 70 nucleotides Ac3H11_2192 - FIG000557: hypothetical protein co-occurring with RecR, at 422,095 to 422,943 _2192 Ac3H11_2193 - UPF0311 protein RPA1785, at 423,233 to 423,616 _2193 Ac3H11_2194 - putative exported protein, at 423,687 to 424,688 _2194 Position (kb) 423 424Strain fitness (log2 ratio) -2 -1 0 1at 422.558 kb on + strand, within Ac3H11_2192at 422.559 kb on - strand, within Ac3H11_2192at 422.559 kb on - strand, within Ac3H11_2192at 422.559 kb on - strand, within Ac3H11_2192at 422.600 kb on + strand, within Ac3H11_2192at 422.600 kb on + strand, within Ac3H11_2192at 422.600 kb on + strand, within Ac3H11_2192at 422.601 kb on - strand, within Ac3H11_2192at 422.601 kb on - strand, within Ac3H11_2192at 422.601 kb on - strand, within Ac3H11_2192at 422.601 kb on - strand, within Ac3H11_2192at 422.732 kb on + strand, within Ac3H11_2192at 422.733 kb on - strand, within Ac3H11_2192at 422.819 kb on + strand, within Ac3H11_2192at 423.082 kb on - strandat 423.127 kb on + strandat 423.127 kb on + strandat 423.127 kb on + strandat 423.127 kb on + strandat 423.127 kb on + strandat 423.127 kb on + strandat 423.127 kb on + strandat 423.128 kb on - strandat 423.128 kb on - strandat 423.128 kb on - strandat 423.128 kb on - strandat 423.128 kb on - strandat 423.132 kb on + strandat 423.132 kb on + strandat 423.132 kb on + strandat 423.132 kb on + strandat 423.133 kb on - strandat 423.139 kb on + strandat 423.139 kb on + strandat 423.139 kb on + strandat 423.139 kb on + strandat 423.139 kb on + strandat 423.139 kb on + strandat 423.139 kb on + strandat 423.140 kb on - strandat 423.140 kb on - strandat 423.140 kb on - strandat 423.140 kb on - strandat 423.140 kb on - strandat 423.140 kb on - strandat 423.140 kb on - strandat 423.140 kb on - strandat 423.140 kb on - strandat 423.368 kb on + strand, within Ac3H11_2193at 423.368 kb on + strand, within Ac3H11_2193at 423.368 kb on + strand, within Ac3H11_2193at 423.368 kb on + strand, within Ac3H11_2193at 423.369 kb on - strand, within Ac3H11_2193at 423.369 kb on - strand, within Ac3H11_2193at 423.401 kb on + strand, within Ac3H11_2193at 423.401 kb on + strand, within Ac3H11_2193at 423.401 kb on + strand, within Ac3H11_2193at 423.401 kb on + strand, within Ac3H11_2193at 423.401 kb on + strand, within Ac3H11_2193at 423.401 kb on + strand, within Ac3H11_2193at 423.402 kb on - strand, within Ac3H11_2193at 423.402 kb on - strand, within Ac3H11_2193at 423.402 kb on - strand, within Ac3H11_2193at 423.402 kb on - strand, within Ac3H11_2193at 423.402 kb on - strand, within Ac3H11_2193at 423.402 kb on - strand, within Ac3H11_2193at 423.402 kb on - strand, within Ac3H11_2193at 423.402 kb on - strand, within Ac3H11_2193at 423.488 kb on + strand, within Ac3H11_2193at 423.488 kb on + strand, within Ac3H11_2193at 423.488 kb on + strand, within Ac3H11_2193at 423.488 kb on + strand, within Ac3H11_2193at 423.488 kb on + strand, within Ac3H11_2193at 423.489 kb on - strand, within Ac3H11_2193at 423.576 kb on - strand, within Ac3H11_2193at 423.589 kb on - strandat 423.668 kb on + strandat 423.668 kb on + strandat 423.668 kb on + strandat 423.668 kb on + strandat 423.668 kb on + strandat 423.668 kb on + strandat 423.668 kb on + strandat 423.668 kb on + strandat 423.668 kb on + strandat 423.669 kb on - strandat 423.669 kb on - strandat 423.669 kb on - strandat 423.669 kb on - strandat 423.669 kb on - strandat 423.976 kb on - strand, within Ac3H11_2194at 424.026 kb on + strand, within Ac3H11_2194at 424.026 kb on + strand, within Ac3H11_2194at 424.027 kb on - strand, within Ac3H11_2194at 424.027 kb on - strand, within Ac3H11_2194at 424.027 kb on - strand, within Ac3H11_2194at 424.266 kb on + strand, within Ac3H11_2194at 424.267 kb on - strand, within Ac3H11_2194

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.001 mg/ml
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422,558 + Ac3H11_2192 0.55 +0.2
422,559 - Ac3H11_2192 0.55 +0.7
422,559 - Ac3H11_2192 0.55 +0.9
422,559 - Ac3H11_2192 0.55 +0.2
422,600 + Ac3H11_2192 0.59 -0.6
422,600 + Ac3H11_2192 0.59 +1.1
422,600 + Ac3H11_2192 0.59 +0.2
422,601 - Ac3H11_2192 0.60 -0.8
422,601 - Ac3H11_2192 0.60 -1.8
422,601 - Ac3H11_2192 0.60 +0.1
422,601 - Ac3H11_2192 0.60 +0.1
422,732 + Ac3H11_2192 0.75 +0.9
422,733 - Ac3H11_2192 0.75 -1.1
422,819 + Ac3H11_2192 0.85 +0.5
423,082 - -0.7
423,127 + +0.7
423,127 + +1.1
423,127 + +0.8
423,127 + -0.9
423,127 + +0.8
423,127 + -0.6
423,127 + -0.2
423,128 - +1.1
423,128 - -0.2
423,128 - -0.1
423,128 - -1.0
423,128 - -1.0
423,132 + +0.2
423,132 + -1.6
423,132 + -2.7
423,132 + +0.3
423,133 - +0.6
423,139 + -1.5
423,139 + -0.3
423,139 + +0.1
423,139 + +0.5
423,139 + -1.0
423,139 + +0.2
423,139 + +1.0
423,140 - +0.4
423,140 - +0.5
423,140 - -0.8
423,140 - -0.5
423,140 - -0.2
423,140 - -1.3
423,140 - +0.6
423,140 - -1.0
423,140 - +0.6
423,368 + Ac3H11_2193 0.35 -0.3
423,368 + Ac3H11_2193 0.35 +0.6
423,368 + Ac3H11_2193 0.35 -0.0
423,368 + Ac3H11_2193 0.35 +1.0
423,369 - Ac3H11_2193 0.35 +0.9
423,369 - Ac3H11_2193 0.35 +0.8
423,401 + Ac3H11_2193 0.44 -0.0
423,401 + Ac3H11_2193 0.44 +0.8
423,401 + Ac3H11_2193 0.44 -0.2
423,401 + Ac3H11_2193 0.44 -0.1
423,401 + Ac3H11_2193 0.44 +0.6
423,401 + Ac3H11_2193 0.44 -0.3
423,402 - Ac3H11_2193 0.44 +0.9
423,402 - Ac3H11_2193 0.44 -0.3
423,402 - Ac3H11_2193 0.44 +0.7
423,402 - Ac3H11_2193 0.44 +0.3
423,402 - Ac3H11_2193 0.44 +0.8
423,402 - Ac3H11_2193 0.44 +1.6
423,402 - Ac3H11_2193 0.44 -0.1
423,402 - Ac3H11_2193 0.44 +0.8
423,488 + Ac3H11_2193 0.66 -0.3
423,488 + Ac3H11_2193 0.66 -0.2
423,488 + Ac3H11_2193 0.66 -0.1
423,488 + Ac3H11_2193 0.66 +1.1
423,488 + Ac3H11_2193 0.66 +0.2
423,489 - Ac3H11_2193 0.67 +0.2
423,576 - Ac3H11_2193 0.89 -0.5
423,589 - +0.4
423,668 + +0.3
423,668 + -0.7
423,668 + +0.8
423,668 + +0.9
423,668 + -1.9
423,668 + +1.7
423,668 + +1.4
423,668 + +0.3
423,668 + -1.2
423,669 - -0.1
423,669 - +0.5
423,669 - +0.5
423,669 - -0.6
423,669 - +0.4
423,976 - Ac3H11_2194 0.29 -0.8
424,026 + Ac3H11_2194 0.34 -0.7
424,026 + Ac3H11_2194 0.34 +0.8
424,027 - Ac3H11_2194 0.34 +0.5
424,027 - Ac3H11_2194 0.34 -0.1
424,027 - Ac3H11_2194 0.34 +0.9
424,266 + Ac3H11_2194 0.58 -0.4
424,267 - Ac3H11_2194 0.58 +0.0

Or see this region's nucleotide sequence