Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1704

Experiment: Fusidic 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1703 and Ac3H11_1704 are separated by 233 nucleotidesAc3H11_1704 and Ac3H11_1705 are separated by 67 nucleotides Ac3H11_1703 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 303,382 to 304,887 _1703 Ac3H11_1704 - hypothetical protein, at 305,121 to 305,522 _1704 Ac3H11_1705 - Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1), at 305,590 to 306,804 _1705 Position (kb) 305 306Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 304.415 kb on + strand, within Ac3H11_1703at 304.415 kb on + strand, within Ac3H11_1703at 304.415 kb on + strand, within Ac3H11_1703at 304.415 kb on + strand, within Ac3H11_1703at 304.415 kb on + strand, within Ac3H11_1703at 304.415 kb on + strand, within Ac3H11_1703at 304.415 kb on + strand, within Ac3H11_1703at 304.415 kb on + strand, within Ac3H11_1703at 304.415 kb on + strand, within Ac3H11_1703at 304.415 kb on + strand, within Ac3H11_1703at 304.416 kb on - strand, within Ac3H11_1703at 304.416 kb on - strand, within Ac3H11_1703at 304.416 kb on - strand, within Ac3H11_1703at 304.416 kb on - strand, within Ac3H11_1703at 304.416 kb on - strand, within Ac3H11_1703at 304.416 kb on - strand, within Ac3H11_1703at 304.416 kb on - strand, within Ac3H11_1703at 304.416 kb on - strand, within Ac3H11_1703at 304.416 kb on - strand, within Ac3H11_1703at 304.416 kb on - strand, within Ac3H11_1703at 304.416 kb on - strand, within Ac3H11_1703at 304.416 kb on - strand, within Ac3H11_1703at 304.416 kb on - strand, within Ac3H11_1703at 304.416 kb on - strand, within Ac3H11_1703at 304.563 kb on + strand, within Ac3H11_1703at 304.563 kb on + strand, within Ac3H11_1703at 304.564 kb on - strand, within Ac3H11_1703at 304.564 kb on - strand, within Ac3H11_1703at 304.564 kb on - strand, within Ac3H11_1703at 304.564 kb on - strand, within Ac3H11_1703at 304.670 kb on + strand, within Ac3H11_1703at 304.670 kb on + strand, within Ac3H11_1703at 304.671 kb on - strand, within Ac3H11_1703at 304.671 kb on - strand, within Ac3H11_1703at 304.671 kb on - strand, within Ac3H11_1703at 304.829 kb on + strandat 304.829 kb on + strandat 304.829 kb on + strandat 304.829 kb on + strandat 304.829 kb on + strandat 304.829 kb on + strandat 304.829 kb on + strandat 304.829 kb on + strandat 304.830 kb on - strandat 304.830 kb on - strandat 304.830 kb on - strandat 304.830 kb on - strandat 304.830 kb on - strandat 304.830 kb on - strandat 304.830 kb on - strandat 304.830 kb on - strandat 304.830 kb on - strandat 304.830 kb on - strandat 304.830 kb on - strandat 304.850 kb on + strandat 304.850 kb on + strandat 304.850 kb on + strandat 304.850 kb on + strandat 304.851 kb on - strandat 304.958 kb on + strandat 304.964 kb on + strandat 304.964 kb on + strandat 304.964 kb on + strandat 304.964 kb on + strandat 304.964 kb on + strandat 304.964 kb on + strandat 304.965 kb on - strandat 304.965 kb on - strandat 304.965 kb on - strandat 304.988 kb on + strandat 304.988 kb on + strandat 304.989 kb on - strandat 304.989 kb on - strandat 305.039 kb on + strandat 305.040 kb on - strandat 305.040 kb on - strandat 305.054 kb on - strandat 305.066 kb on + strandat 305.066 kb on + strandat 305.071 kb on + strandat 305.072 kb on - strandat 305.072 kb on - strandat 305.949 kb on - strand, within Ac3H11_1705at 306.071 kb on + strand, within Ac3H11_1705at 306.071 kb on + strand, within Ac3H11_1705at 306.071 kb on + strand, within Ac3H11_1705at 306.072 kb on - strand, within Ac3H11_1705at 306.095 kb on + strand, within Ac3H11_1705at 306.128 kb on + strand, within Ac3H11_1705at 306.129 kb on - strand, within Ac3H11_1705at 306.230 kb on + strand, within Ac3H11_1705at 306.231 kb on - strand, within Ac3H11_1705at 306.231 kb on - strand, within Ac3H11_1705at 306.231 kb on - strand, within Ac3H11_1705at 306.331 kb on - strand, within Ac3H11_1705at 306.331 kb on - strand, within Ac3H11_1705at 306.375 kb on - strand, within Ac3H11_1705at 306.375 kb on - strand, within Ac3H11_1705at 306.375 kb on - strand, within Ac3H11_1705at 306.375 kb on - strand, within Ac3H11_1705at 306.375 kb on - strand, within Ac3H11_1705at 306.375 kb on - strand, within Ac3H11_1705

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.001 mg/ml
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304,415 + Ac3H11_1703 0.69 +0.4
304,415 + Ac3H11_1703 0.69 -0.4
304,415 + Ac3H11_1703 0.69 -1.8
304,415 + Ac3H11_1703 0.69 +0.3
304,415 + Ac3H11_1703 0.69 -1.3
304,415 + Ac3H11_1703 0.69 +0.4
304,415 + Ac3H11_1703 0.69 +0.4
304,415 + Ac3H11_1703 0.69 -1.6
304,415 + Ac3H11_1703 0.69 +0.1
304,415 + Ac3H11_1703 0.69 +0.1
304,416 - Ac3H11_1703 0.69 +0.9
304,416 - Ac3H11_1703 0.69 -1.0
304,416 - Ac3H11_1703 0.69 +0.1
304,416 - Ac3H11_1703 0.69 +0.6
304,416 - Ac3H11_1703 0.69 +0.1
304,416 - Ac3H11_1703 0.69 -0.9
304,416 - Ac3H11_1703 0.69 +0.3
304,416 - Ac3H11_1703 0.69 +0.8
304,416 - Ac3H11_1703 0.69 -2.2
304,416 - Ac3H11_1703 0.69 -0.0
304,416 - Ac3H11_1703 0.69 +2.3
304,416 - Ac3H11_1703 0.69 -0.6
304,416 - Ac3H11_1703 0.69 -0.9
304,416 - Ac3H11_1703 0.69 +0.1
304,563 + Ac3H11_1703 0.78 -0.0
304,563 + Ac3H11_1703 0.78 +0.3
304,564 - Ac3H11_1703 0.78 +0.1
304,564 - Ac3H11_1703 0.78 +0.6
304,564 - Ac3H11_1703 0.78 -0.3
304,564 - Ac3H11_1703 0.78 +0.5
304,670 + Ac3H11_1703 0.86 -1.7
304,670 + Ac3H11_1703 0.86 +0.7
304,671 - Ac3H11_1703 0.86 +0.5
304,671 - Ac3H11_1703 0.86 -0.2
304,671 - Ac3H11_1703 0.86 +0.9
304,829 + +0.7
304,829 + +0.6
304,829 + -3.4
304,829 + -0.1
304,829 + +0.7
304,829 + +1.0
304,829 + +0.6
304,829 + +0.5
304,830 - +1.3
304,830 - +0.6
304,830 - -0.3
304,830 - -0.2
304,830 - +1.1
304,830 - -0.4
304,830 - +0.8
304,830 - +0.7
304,830 - -1.2
304,830 - +0.1
304,830 - -1.1
304,850 + -0.2
304,850 + +0.0
304,850 + -1.4
304,850 + -0.8
304,851 - -0.8
304,958 + -0.8
304,964 + +0.4
304,964 + +0.7
304,964 + +1.3
304,964 + +0.1
304,964 + -0.4
304,964 + +0.6
304,965 - -0.0
304,965 - +1.0
304,965 - +0.6
304,988 + -1.4
304,988 + +0.6
304,989 - -0.0
304,989 - +0.3
305,039 + -2.1
305,040 - +2.1
305,040 - +0.8
305,054 - -1.0
305,066 + -1.1
305,066 + -0.7
305,071 + -1.8
305,072 - -0.1
305,072 - -2.4
305,949 - Ac3H11_1705 0.30 -0.3
306,071 + Ac3H11_1705 0.40 -2.3
306,071 + Ac3H11_1705 0.40 -0.8
306,071 + Ac3H11_1705 0.40 -1.7
306,072 - Ac3H11_1705 0.40 -3.1
306,095 + Ac3H11_1705 0.42 +0.6
306,128 + Ac3H11_1705 0.44 -2.8
306,129 - Ac3H11_1705 0.44 -1.8
306,230 + Ac3H11_1705 0.53 -2.3
306,231 - Ac3H11_1705 0.53 -0.8
306,231 - Ac3H11_1705 0.53 -1.6
306,231 - Ac3H11_1705 0.53 -1.6
306,331 - Ac3H11_1705 0.61 +0.4
306,331 - Ac3H11_1705 0.61 -1.8
306,375 - Ac3H11_1705 0.65 -0.8
306,375 - Ac3H11_1705 0.65 -0.4
306,375 - Ac3H11_1705 0.65 +0.5
306,375 - Ac3H11_1705 0.65 -0.8
306,375 - Ac3H11_1705 0.65 -1.8
306,375 - Ac3H11_1705 0.65 +0.2

Or see this region's nucleotide sequence