Experiment: Fusidic 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_1628 and Ac3H11_1629 are separated by 262 nucleotides Ac3H11_1629 and Ac3H11_1630 are separated by 67 nucleotides
Ac3H11_1628 - Large extracellular alpha-helical protein, at 212,509 to 218,493
_1628
Ac3H11_1629 - FIG00901576: hypothetical protein, at 218,756 to 219,364
_1629
Ac3H11_1630 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 219,432 to 220,871
_1630
Position (kb) 218
219
220 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 217.892 kb on + strand, within Ac3H11_1628 at 217.892 kb on + strand, within Ac3H11_1628 at 218.093 kb on + strand at 218.093 kb on + strand at 218.093 kb on + strand at 218.093 kb on + strand at 218.093 kb on + strand at 218.093 kb on + strand at 218.093 kb on + strand at 218.093 kb on + strand at 218.093 kb on + strand at 218.094 kb on - strand at 218.094 kb on - strand at 218.094 kb on - strand at 218.094 kb on - strand at 218.094 kb on - strand at 218.094 kb on - strand at 218.094 kb on - strand at 218.109 kb on + strand at 218.573 kb on - strand at 218.573 kb on - strand at 218.613 kb on + strand at 218.613 kb on + strand at 218.613 kb on + strand at 218.613 kb on + strand at 218.613 kb on + strand at 218.613 kb on + strand at 218.614 kb on - strand at 218.614 kb on - strand at 218.614 kb on - strand at 218.614 kb on - strand at 218.614 kb on - strand at 218.617 kb on + strand at 218.617 kb on + strand at 218.617 kb on + strand at 218.617 kb on + strand at 218.617 kb on + strand at 218.618 kb on - strand at 218.618 kb on - strand at 218.618 kb on - strand at 218.618 kb on - strand at 218.618 kb on - strand at 218.771 kb on + strand at 218.771 kb on + strand at 218.772 kb on - strand at 218.772 kb on - strand at 218.841 kb on - strand, within Ac3H11_1629 at 218.897 kb on + strand, within Ac3H11_1629 at 218.898 kb on - strand, within Ac3H11_1629 at 219.362 kb on + strand at 219.363 kb on - strand at 219.363 kb on - strand at 219.388 kb on + strand at 219.389 kb on - strand at 219.389 kb on - strand at 219.392 kb on + strand at 219.393 kb on - strand at 219.393 kb on - strand at 219.508 kb on + strand at 219.509 kb on - strand at 220.030 kb on + strand, within Ac3H11_1630 at 220.030 kb on + strand, within Ac3H11_1630 at 220.031 kb on - strand, within Ac3H11_1630 at 220.134 kb on + strand, within Ac3H11_1630 at 220.135 kb on - strand, within Ac3H11_1630 at 220.135 kb on - strand, within Ac3H11_1630 at 220.135 kb on - strand, within Ac3H11_1630 at 220.135 kb on - strand, within Ac3H11_1630 at 220.135 kb on - strand, within Ac3H11_1630 at 220.306 kb on + strand, within Ac3H11_1630
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.001 mg/ml remove 217,892 + Ac3H11_1628 0.90 -0.2 217,892 + Ac3H11_1628 0.90 +0.7 218,093 + +0.1 218,093 + -1.2 218,093 + -0.7 218,093 + -0.3 218,093 + +0.3 218,093 + +0.4 218,093 + +0.1 218,093 + -0.0 218,093 + -0.6 218,094 - -0.2 218,094 - +0.2 218,094 - +0.4 218,094 - +1.1 218,094 - +0.9 218,094 - +0.0 218,094 - -0.0 218,109 + +1.1 218,573 - +0.4 218,573 - -1.0 218,613 + +1.2 218,613 + -0.2 218,613 + -0.9 218,613 + -0.1 218,613 + +0.7 218,613 + +0.9 218,614 - +0.7 218,614 - -1.0 218,614 - -0.4 218,614 - +0.4 218,614 - -0.6 218,617 + +0.1 218,617 + +0.1 218,617 + -0.4 218,617 + +1.4 218,617 + -0.1 218,618 - +0.2 218,618 - +0.2 218,618 - -0.3 218,618 - -0.3 218,618 - +0.4 218,771 + +0.6 218,771 + +0.8 218,772 - +0.5 218,772 - -3.8 218,841 - Ac3H11_1629 0.14 -0.5 218,897 + Ac3H11_1629 0.23 +0.2 218,898 - Ac3H11_1629 0.23 -1.3 219,362 + -1.8 219,363 - +0.7 219,363 - +0.2 219,388 + +0.6 219,389 - +0.8 219,389 - +0.6 219,392 + -1.4 219,393 - -1.2 219,393 - +1.3 219,508 + +0.4 219,509 - +0.2 220,030 + Ac3H11_1630 0.42 +0.6 220,030 + Ac3H11_1630 0.42 +0.1 220,031 - Ac3H11_1630 0.42 +0.0 220,134 + Ac3H11_1630 0.49 -0.9 220,135 - Ac3H11_1630 0.49 +1.3 220,135 - Ac3H11_1630 0.49 +0.3 220,135 - Ac3H11_1630 0.49 -0.1 220,135 - Ac3H11_1630 0.49 -2.1 220,135 - Ac3H11_1630 0.49 +0.8 220,306 + Ac3H11_1630 0.61 +0.0
Or see this region's nucleotide sequence