Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS05075

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS05065 and AZOBR_RS05070 are separated by 144 nucleotidesAZOBR_RS05070 and AZOBR_RS05075 are separated by 147 nucleotidesAZOBR_RS05075 and AZOBR_RS05080 are separated by 207 nucleotides AZOBR_RS05065: AZOBR_RS05065 - hypothetical protein, at 1,074,448 to 1,074,993 _RS05065 AZOBR_RS05070: AZOBR_RS05070 - peptidase A8, at 1,075,138 to 1,075,641 _RS05070 AZOBR_RS05075: AZOBR_RS05075 - isoleucyl-tRNA synthetase, at 1,075,789 to 1,078,644 _RS05075 AZOBR_RS05080: AZOBR_RS05080 - orotate phosphoribosyltransferase, at 1,078,852 to 1,079,544 _RS05080 Position (kb) 1075 1076 1077 1078 1079Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1075.077 kb on + strandat 1075.113 kb on + strandat 1075.115 kb on + strandat 1075.115 kb on + strandat 1075.116 kb on - strandat 1075.137 kb on - strandat 1075.137 kb on - strandat 1078.946 kb on + strandat 1079.231 kb on + strand, within AZOBR_RS05080at 1079.232 kb on - strand, within AZOBR_RS05080at 1079.232 kb on - strand, within AZOBR_RS05080at 1079.550 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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1,075,077 + -0.6
1,075,113 + +0.2
1,075,115 + -2.6
1,075,115 + -1.3
1,075,116 - +0.6
1,075,137 - -0.4
1,075,137 - -0.5
1,078,946 + -0.8
1,079,231 + AZOBR_RS05080 0.55 -0.3
1,079,232 - AZOBR_RS05080 0.55 -1.6
1,079,232 - AZOBR_RS05080 0.55 -4.2
1,079,550 - -0.8

Or see this region's nucleotide sequence