Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS03185

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS03180 and AZOBR_RS03185 overlap by 4 nucleotidesAZOBR_RS03185 and AZOBR_RS03190 are separated by 33 nucleotides AZOBR_RS03180: AZOBR_RS03180 - hypothetical protein, at 678,481 to 678,876 _RS03180 AZOBR_RS03185: AZOBR_RS03185 - putative transcriptional regulator AbrB family, at 678,873 to 679,139 _RS03185 AZOBR_RS03190: AZOBR_RS03190 - aerobic cobaltochelatase subunit CobS, at 679,173 to 680,177 _RS03190 Position (kb) 678 679 680Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 678.677 kb on - strand, within AZOBR_RS03180at 678.677 kb on - strand, within AZOBR_RS03180at 678.677 kb on - strand, within AZOBR_RS03180at 678.677 kb on - strand, within AZOBR_RS03180at 678.677 kb on - strand, within AZOBR_RS03180at 678.677 kb on - strand, within AZOBR_RS03180at 679.132 kb on + strandat 679.133 kb on - strandat 679.232 kb on - strandat 679.235 kb on - strandat 679.504 kb on + strand, within AZOBR_RS03190at 679.504 kb on + strand, within AZOBR_RS03190at 679.505 kb on - strand, within AZOBR_RS03190at 679.505 kb on - strand, within AZOBR_RS03190at 679.570 kb on + strand, within AZOBR_RS03190

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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678,677 - AZOBR_RS03180 0.49 -0.0
678,677 - AZOBR_RS03180 0.49 +0.3
678,677 - AZOBR_RS03180 0.49 +0.3
678,677 - AZOBR_RS03180 0.49 +0.5
678,677 - AZOBR_RS03180 0.49 +2.1
678,677 - AZOBR_RS03180 0.49 +1.0
679,132 + -1.9
679,133 - -0.4
679,232 - -0.1
679,235 - -0.9
679,504 + AZOBR_RS03190 0.33 -0.3
679,504 + AZOBR_RS03190 0.33 -1.7
679,505 - AZOBR_RS03190 0.33 -1.0
679,505 - AZOBR_RS03190 0.33 -3.8
679,570 + AZOBR_RS03190 0.40 -2.6

Or see this region's nucleotide sequence