Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_03925

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_03915 and AO353_03920 are separated by 96 nucleotidesAO353_03920 and AO353_03925 are separated by 5 nucleotidesAO353_03925 and AO353_03930 are separated by 174 nucleotidesAO353_03930 and AO353_03935 are separated by 58 nucleotides AO353_03915: AO353_03915 - LysR family transcriptional regulator, at 837,965 to 838,858 _03915 AO353_03920: AO353_03920 - acetyltransferase, at 838,955 to 839,356 _03920 AO353_03925: AO353_03925 - lysine transporter LysE, at 839,362 to 839,964 _03925 AO353_03930: AO353_03930 - superoxide dismutase, at 840,139 to 840,735 _03930 AO353_03935: AO353_03935 - fructose-bisphosphate aldolase, at 840,794 to 841,087 _03935 Position (kb) 839 840Strain fitness (log2 ratio) -2 -1 0 1 2 3at 838.499 kb on + strand, within AO353_03915at 838.499 kb on + strand, within AO353_03915at 838.499 kb on + strand, within AO353_03915at 838.499 kb on + strand, within AO353_03915at 838.499 kb on + strand, within AO353_03915at 838.499 kb on + strand, within AO353_03915at 838.499 kb on + strand, within AO353_03915at 838.499 kb on + strand, within AO353_03915at 838.499 kb on + strand, within AO353_03915at 838.500 kb on - strand, within AO353_03915at 838.500 kb on - strand, within AO353_03915at 838.500 kb on - strand, within AO353_03915at 838.500 kb on - strand, within AO353_03915at 838.500 kb on - strand, within AO353_03915at 838.500 kb on - strand, within AO353_03915at 838.500 kb on - strand, within AO353_03915at 838.500 kb on - strand, within AO353_03915at 838.500 kb on - strandat 838.500 kb on - strand, within AO353_03915at 838.500 kb on - strand, within AO353_03915at 838.500 kb on - strand, within AO353_03915at 838.500 kb on - strand, within AO353_03915at 838.500 kb on - strand, within AO353_03915at 838.500 kb on - strand, within AO353_03915at 838.500 kb on - strand, within AO353_03915at 838.500 kb on - strand, within AO353_03915at 838.846 kb on + strandat 838.846 kb on + strandat 838.847 kb on - strandat 839.021 kb on + strand, within AO353_03920at 839.022 kb on - strand, within AO353_03920at 839.022 kb on - strand, within AO353_03920at 839.022 kb on - strand, within AO353_03920at 839.033 kb on - strand, within AO353_03920at 839.153 kb on + strand, within AO353_03920at 839.153 kb on + strand, within AO353_03920at 839.153 kb on + strand, within AO353_03920at 839.154 kb on - strand, within AO353_03920at 839.154 kb on - strand, within AO353_03920at 839.273 kb on + strand, within AO353_03920at 839.274 kb on - strand, within AO353_03920at 839.355 kb on - strandat 839.355 kb on - strandat 839.355 kb on - strandat 839.355 kb on - strandat 839.355 kb on - strandat 839.361 kb on + strandat 839.361 kb on + strandat 839.361 kb on + strandat 839.361 kb on + strandat 839.362 kb on - strandat 839.362 kb on - strandat 839.362 kb on - strandat 839.362 kb on - strandat 839.362 kb on - strandat 839.362 kb on - strandat 839.362 kb on - strandat 839.362 kb on - strandat 839.362 kb on - strandat 839.374 kb on + strandat 839.375 kb on - strandat 839.375 kb on - strandat 839.375 kb on - strandat 839.375 kb on - strandat 839.375 kb on - strandat 839.737 kb on + strand, within AO353_03925at 839.737 kb on + strand, within AO353_03925at 839.737 kb on + strand, within AO353_03925at 839.737 kb on + strand, within AO353_03925at 839.738 kb on - strand, within AO353_03925at 839.738 kb on - strand, within AO353_03925at 839.738 kb on - strand, within AO353_03925at 839.738 kb on - strand, within AO353_03925at 839.738 kb on - strand, within AO353_03925at 839.738 kb on - strand, within AO353_03925at 839.797 kb on + strand, within AO353_03925at 839.797 kb on + strand, within AO353_03925at 839.797 kb on + strand, within AO353_03925at 839.797 kb on + strand, within AO353_03925at 839.797 kb on + strand, within AO353_03925at 839.798 kb on - strand, within AO353_03925at 839.798 kb on - strand, within AO353_03925at 839.798 kb on - strand, within AO353_03925at 839.798 kb on - strand, within AO353_03925at 839.798 kb on - strand, within AO353_03925at 839.798 kb on - strand, within AO353_03925at 839.798 kb on - strand, within AO353_03925at 839.798 kb on - strand, within AO353_03925at 839.801 kb on + strand, within AO353_03925at 839.801 kb on + strand, within AO353_03925at 839.801 kb on + strand, within AO353_03925at 839.801 kb on + strand, within AO353_03925at 839.801 kb on + strand, within AO353_03925at 839.802 kb on - strand, within AO353_03925at 839.802 kb on - strand, within AO353_03925at 839.802 kb on - strand, within AO353_03925at 839.966 kb on + strandat 839.966 kb on + strandat 839.970 kb on - strandat 839.970 kb on - strandat 839.970 kb on - strandat 839.970 kb on - strandat 839.970 kb on - strandat 839.990 kb on + strandat 839.990 kb on + strandat 839.991 kb on - strandat 839.991 kb on - strandat 840.015 kb on - strandat 840.033 kb on + strandat 840.033 kb on + strandat 840.033 kb on + strandat 840.033 kb on + strandat 840.034 kb on - strandat 840.034 kb on - strandat 840.034 kb on - strandat 840.061 kb on + strandat 840.733 kb on + strandat 840.733 kb on + strandat 840.733 kb on + strandat 840.733 kb on + strandat 840.734 kb on - strandat 840.734 kb on - strandat 840.734 kb on - strandat 840.778 kb on + strandat 840.909 kb on + strand, within AO353_03935at 840.945 kb on + strand, within AO353_03935at 840.945 kb on + strand, within AO353_03935at 840.945 kb on + strand, within AO353_03935at 840.945 kb on + strand, within AO353_03935at 840.945 kb on + strandat 840.945 kb on + strand, within AO353_03935at 840.946 kb on - strand, within AO353_03935at 840.946 kb on - strand, within AO353_03935at 840.946 kb on - strand, within AO353_03935at 840.962 kb on - strand, within AO353_03935

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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838,499 + AO353_03915 0.60 +0.1
838,499 + AO353_03915 0.60 +0.5
838,499 + AO353_03915 0.60 +0.1
838,499 + AO353_03915 0.60 -0.7
838,499 + AO353_03915 0.60 +0.4
838,499 + AO353_03915 0.60 +0.1
838,499 + AO353_03915 0.60 -0.4
838,499 + AO353_03915 0.60 +0.1
838,499 + AO353_03915 0.60 -1.2
838,500 - AO353_03915 0.60 -2.7
838,500 - AO353_03915 0.60 -0.2
838,500 - AO353_03915 0.60 -0.9
838,500 - AO353_03915 0.60 -1.2
838,500 - AO353_03915 0.60 -0.9
838,500 - AO353_03915 0.60 +0.1
838,500 - AO353_03915 0.60 +0.7
838,500 - AO353_03915 0.60 -0.5
838,500 - +1.1
838,500 - AO353_03915 0.60 +1.4
838,500 - AO353_03915 0.60 -0.3
838,500 - AO353_03915 0.60 +0.1
838,500 - AO353_03915 0.60 -0.4
838,500 - AO353_03915 0.60 +0.5
838,500 - AO353_03915 0.60 +0.1
838,500 - AO353_03915 0.60 -0.1
838,500 - AO353_03915 0.60 +0.5
838,846 + +2.1
838,846 + -0.6
838,847 - +0.7
839,021 + AO353_03920 0.16 +1.4
839,022 - AO353_03920 0.17 -0.9
839,022 - AO353_03920 0.17 -0.5
839,022 - AO353_03920 0.17 +0.3
839,033 - AO353_03920 0.19 +0.9
839,153 + AO353_03920 0.49 +0.1
839,153 + AO353_03920 0.49 +1.2
839,153 + AO353_03920 0.49 +0.1
839,154 - AO353_03920 0.50 +0.4
839,154 - AO353_03920 0.50 -0.9
839,273 + AO353_03920 0.79 +0.1
839,274 - AO353_03920 0.79 -0.0
839,355 - -0.3
839,355 - +1.7
839,355 - +0.3
839,355 - +0.8
839,355 - +0.1
839,361 + -0.3
839,361 + +1.4
839,361 + +1.1
839,361 + -1.6
839,362 - -0.9
839,362 - +0.1
839,362 - -0.7
839,362 - +1.1
839,362 - +1.7
839,362 - +0.1
839,362 - -0.4
839,362 - -1.5
839,362 - -0.3
839,374 + -0.1
839,375 - -1.0
839,375 - +0.1
839,375 - -0.9
839,375 - -0.6
839,375 - +0.1
839,737 + AO353_03925 0.62 -0.5
839,737 + AO353_03925 0.62 -0.3
839,737 + AO353_03925 0.62 +1.1
839,737 + AO353_03925 0.62 +0.9
839,738 - AO353_03925 0.62 +1.1
839,738 - AO353_03925 0.62 -0.5
839,738 - AO353_03925 0.62 -0.7
839,738 - AO353_03925 0.62 -0.3
839,738 - AO353_03925 0.62 +0.1
839,738 - AO353_03925 0.62 -1.3
839,797 + AO353_03925 0.72 -0.3
839,797 + AO353_03925 0.72 +0.1
839,797 + AO353_03925 0.72 -0.9
839,797 + AO353_03925 0.72 -0.5
839,797 + AO353_03925 0.72 -1.9
839,798 - AO353_03925 0.72 -0.4
839,798 - AO353_03925 0.72 -0.9
839,798 - AO353_03925 0.72 -0.4
839,798 - AO353_03925 0.72 -0.8
839,798 - AO353_03925 0.72 -1.8
839,798 - AO353_03925 0.72 -1.5
839,798 - AO353_03925 0.72 -0.9
839,798 - AO353_03925 0.72 +0.7
839,801 + AO353_03925 0.73 -0.5
839,801 + AO353_03925 0.73 -0.7
839,801 + AO353_03925 0.73 +0.1
839,801 + AO353_03925 0.73 +0.5
839,801 + AO353_03925 0.73 +0.1
839,802 - AO353_03925 0.73 +0.7
839,802 - AO353_03925 0.73 -2.5
839,802 - AO353_03925 0.73 -0.9
839,966 + -0.6
839,966 + -1.7
839,970 - +1.3
839,970 - -0.3
839,970 - -1.5
839,970 - +0.8
839,970 - +0.7
839,990 + -1.2
839,990 + -0.3
839,991 - +0.7
839,991 - +0.1
840,015 - +0.8
840,033 + +0.5
840,033 + -0.3
840,033 + -0.3
840,033 + +0.3
840,034 - +0.1
840,034 - -0.6
840,034 - -1.5
840,061 + +0.8
840,733 + +0.1
840,733 + -0.8
840,733 + -0.7
840,733 + -1.2
840,734 - +0.6
840,734 - -0.2
840,734 - -1.2
840,778 + +0.7
840,909 + AO353_03935 0.39 +0.7
840,945 + AO353_03935 0.51 +1.1
840,945 + AO353_03935 0.51 +0.1
840,945 + AO353_03935 0.51 +0.3
840,945 + AO353_03935 0.51 +1.2
840,945 + +1.1
840,945 + AO353_03935 0.51 +0.7
840,946 - AO353_03935 0.52 +0.5
840,946 - AO353_03935 0.52 -1.4
840,946 - AO353_03935 0.52 -0.4
840,962 - AO353_03935 0.57 +3.1

Or see this region's nucleotide sequence