Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS17645

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR86_RS17640 and ABZR86_RS17645 are separated by 81 nucleotidesABZR86_RS17645 and ABZR86_RS17650 are separated by 36 nucleotidesABZR86_RS17650 and ABZR86_RS17655 are separated by 10 nucleotidesABZR86_RS17655 and ABZR86_RS17660 are separated by 126 nucleotides ABZR86_RS17640: ABZR86_RS17640 - hypothetical protein, at 3,985,093 to 3,986,178 _RS17640 ABZR86_RS17645: ABZR86_RS17645 - hypothetical protein, at 3,986,260 to 3,986,757 _RS17645 ABZR86_RS17650: ABZR86_RS17650 - ADP-ribosylglycohydrolase family protein, at 3,986,794 to 3,986,982 _RS17650 ABZR86_RS17655: ABZR86_RS17655 - hypothetical protein, at 3,986,993 to 3,987,466 _RS17655 ABZR86_RS17660: ABZR86_RS17660 - hypothetical protein, at 3,987,593 to 3,988,189 _RS17660 Position (kb) 3986 3987Strain fitness (log2 ratio) -1 0 1 2at 3985.459 kb on + strand, within ABZR86_RS17640at 3985.459 kb on + strand, within ABZR86_RS17640at 3985.460 kb on - strand, within ABZR86_RS17640at 3985.478 kb on + strand, within ABZR86_RS17640at 3985.514 kb on - strand, within ABZR86_RS17640at 3985.568 kb on - strand, within ABZR86_RS17640at 3985.574 kb on - strand, within ABZR86_RS17640at 3985.694 kb on - strand, within ABZR86_RS17640at 3985.753 kb on + strand, within ABZR86_RS17640at 3985.753 kb on + strand, within ABZR86_RS17640at 3985.753 kb on + strand, within ABZR86_RS17640at 3985.754 kb on - strand, within ABZR86_RS17640at 3985.909 kb on + strand, within ABZR86_RS17640at 3985.910 kb on - strand, within ABZR86_RS17640at 3985.910 kb on - strand, within ABZR86_RS17640at 3985.910 kb on - strand, within ABZR86_RS17640at 3986.144 kb on + strandat 3986.215 kb on - strandat 3986.257 kb on + strandat 3986.257 kb on + strandat 3986.257 kb on + strandat 3986.257 kb on + strandat 3986.257 kb on + strandat 3986.259 kb on + strandat 3986.259 kb on + strandat 3986.259 kb on + strandat 3986.260 kb on - strandat 3986.282 kb on + strandat 3986.283 kb on - strandat 3986.306 kb on + strandat 3986.307 kb on - strandat 3986.358 kb on + strand, within ABZR86_RS17645at 3986.394 kb on + strand, within ABZR86_RS17645at 3986.394 kb on + strand, within ABZR86_RS17645at 3986.394 kb on + strand, within ABZR86_RS17645at 3986.394 kb on + strand, within ABZR86_RS17645at 3986.395 kb on - strand, within ABZR86_RS17645at 3986.404 kb on + strand, within ABZR86_RS17645at 3986.404 kb on + strand, within ABZR86_RS17645at 3986.405 kb on - strand, within ABZR86_RS17645at 3986.405 kb on - strand, within ABZR86_RS17645at 3986.405 kb on - strand, within ABZR86_RS17645at 3986.405 kb on - strand, within ABZR86_RS17645at 3986.540 kb on + strand, within ABZR86_RS17645at 3986.805 kb on + strandat 3986.805 kb on + strandat 3986.805 kb on + strandat 3986.805 kb on + strandat 3986.805 kb on + strandat 3986.806 kb on - strandat 3986.806 kb on - strandat 3986.806 kb on - strandat 3986.807 kb on + strandat 3986.807 kb on + strandat 3986.807 kb on + strandat 3986.808 kb on - strandat 3986.808 kb on - strandat 3986.877 kb on - strand, within ABZR86_RS17650at 3986.924 kb on + strand, within ABZR86_RS17650at 3986.924 kb on + strand, within ABZR86_RS17650at 3986.924 kb on + strand, within ABZR86_RS17650at 3986.925 kb on - strand, within ABZR86_RS17650at 3986.949 kb on - strand, within ABZR86_RS17650at 3987.184 kb on + strand, within ABZR86_RS17655at 3987.184 kb on + strand, within ABZR86_RS17655at 3987.184 kb on + strand, within ABZR86_RS17655at 3987.185 kb on - strand, within ABZR86_RS17655at 3987.185 kb on - strand, within ABZR86_RS17655at 3987.185 kb on - strand, within ABZR86_RS17655at 3987.185 kb on - strand, within ABZR86_RS17655at 3987.185 kb on - strand, within ABZR86_RS17655at 3987.185 kb on - strand, within ABZR86_RS17655at 3987.263 kb on + strand, within ABZR86_RS17655at 3987.263 kb on + strand, within ABZR86_RS17655at 3987.264 kb on - strand, within ABZR86_RS17655at 3987.302 kb on + strand, within ABZR86_RS17655at 3987.303 kb on - strand, within ABZR86_RS17655at 3987.333 kb on + strand, within ABZR86_RS17655at 3987.382 kb on - strand, within ABZR86_RS17655at 3987.395 kb on + strand, within ABZR86_RS17655at 3987.396 kb on - strand, within ABZR86_RS17655at 3987.396 kb on - strand, within ABZR86_RS17655at 3987.396 kb on - strand, within ABZR86_RS17655at 3987.540 kb on + strandat 3987.565 kb on + strandat 3987.600 kb on - strandat 3987.624 kb on - strandat 3987.668 kb on + strand, within ABZR86_RS17660at 3987.669 kb on - strand, within ABZR86_RS17660at 3987.669 kb on - strand, within ABZR86_RS17660at 3987.669 kb on - strand, within ABZR86_RS17660at 3987.712 kb on + strand, within ABZR86_RS17660at 3987.733 kb on - strand, within ABZR86_RS17660at 3987.745 kb on + strand, within ABZR86_RS17660

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
3,985,459 + ABZR86_RS17640 0.34 +0.7
3,985,459 + ABZR86_RS17640 0.34 -0.2
3,985,460 - ABZR86_RS17640 0.34 -0.4
3,985,478 + ABZR86_RS17640 0.35 +0.2
3,985,514 - ABZR86_RS17640 0.39 -0.0
3,985,568 - ABZR86_RS17640 0.44 -0.1
3,985,574 - ABZR86_RS17640 0.44 +0.7
3,985,694 - ABZR86_RS17640 0.55 -0.2
3,985,753 + ABZR86_RS17640 0.61 +0.1
3,985,753 + ABZR86_RS17640 0.61 -0.6
3,985,753 + ABZR86_RS17640 0.61 -0.3
3,985,754 - ABZR86_RS17640 0.61 +1.2
3,985,909 + ABZR86_RS17640 0.75 -0.4
3,985,910 - ABZR86_RS17640 0.75 -1.1
3,985,910 - ABZR86_RS17640 0.75 +0.9
3,985,910 - ABZR86_RS17640 0.75 -0.6
3,986,144 + +0.7
3,986,215 - -0.4
3,986,257 + +0.1
3,986,257 + +0.4
3,986,257 + -0.7
3,986,257 + -0.8
3,986,257 + -0.0
3,986,259 + +0.3
3,986,259 + +0.0
3,986,259 + +1.2
3,986,260 - -0.4
3,986,282 + +0.1
3,986,283 - -0.8
3,986,306 + -0.4
3,986,307 - +0.2
3,986,358 + ABZR86_RS17645 0.20 +0.6
3,986,394 + ABZR86_RS17645 0.27 +0.1
3,986,394 + ABZR86_RS17645 0.27 +0.4
3,986,394 + ABZR86_RS17645 0.27 -0.2
3,986,394 + ABZR86_RS17645 0.27 +1.4
3,986,395 - ABZR86_RS17645 0.27 +0.4
3,986,404 + ABZR86_RS17645 0.29 +0.4
3,986,404 + ABZR86_RS17645 0.29 +0.8
3,986,405 - ABZR86_RS17645 0.29 +0.3
3,986,405 - ABZR86_RS17645 0.29 +0.0
3,986,405 - ABZR86_RS17645 0.29 -0.1
3,986,405 - ABZR86_RS17645 0.29 +0.5
3,986,540 + ABZR86_RS17645 0.56 -0.2
3,986,805 + +0.2
3,986,805 + -0.0
3,986,805 + -0.6
3,986,805 + -0.2
3,986,805 + +0.2
3,986,806 - -0.6
3,986,806 - +0.3
3,986,806 - -0.0
3,986,807 + +0.3
3,986,807 + -0.1
3,986,807 + +0.3
3,986,808 - +0.7
3,986,808 - +0.2
3,986,877 - ABZR86_RS17650 0.44 -0.3
3,986,924 + ABZR86_RS17650 0.69 +0.2
3,986,924 + ABZR86_RS17650 0.69 -0.5
3,986,924 + ABZR86_RS17650 0.69 +0.5
3,986,925 - ABZR86_RS17650 0.69 -0.1
3,986,949 - ABZR86_RS17650 0.82 +1.2
3,987,184 + ABZR86_RS17655 0.40 -1.0
3,987,184 + ABZR86_RS17655 0.40 +0.1
3,987,184 + ABZR86_RS17655 0.40 +2.1
3,987,185 - ABZR86_RS17655 0.41 -0.4
3,987,185 - ABZR86_RS17655 0.41 +0.1
3,987,185 - ABZR86_RS17655 0.41 -1.7
3,987,185 - ABZR86_RS17655 0.41 +0.0
3,987,185 - ABZR86_RS17655 0.41 -0.5
3,987,185 - ABZR86_RS17655 0.41 -0.3
3,987,263 + ABZR86_RS17655 0.57 +0.3
3,987,263 + ABZR86_RS17655 0.57 +0.5
3,987,264 - ABZR86_RS17655 0.57 -0.0
3,987,302 + ABZR86_RS17655 0.65 -0.1
3,987,303 - ABZR86_RS17655 0.65 +0.3
3,987,333 + ABZR86_RS17655 0.72 -0.2
3,987,382 - ABZR86_RS17655 0.82 +0.3
3,987,395 + ABZR86_RS17655 0.85 -1.3
3,987,396 - ABZR86_RS17655 0.85 -0.4
3,987,396 - ABZR86_RS17655 0.85 +0.2
3,987,396 - ABZR86_RS17655 0.85 -0.7
3,987,540 + +0.1
3,987,565 + -0.8
3,987,600 - +0.4
3,987,624 - +0.3
3,987,668 + ABZR86_RS17660 0.13 -0.2
3,987,669 - ABZR86_RS17660 0.13 +0.3
3,987,669 - ABZR86_RS17660 0.13 +1.4
3,987,669 - ABZR86_RS17660 0.13 -0.1
3,987,712 + ABZR86_RS17660 0.20 -1.1
3,987,733 - ABZR86_RS17660 0.23 -0.2
3,987,745 + ABZR86_RS17660 0.25 -0.0

Or see this region's nucleotide sequence