Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS13265

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS13255 and ABZR86_RS13260 are separated by 324 nucleotidesABZR86_RS13260 and ABZR86_RS13265 are separated by 13 nucleotidesABZR86_RS13265 and ABZR86_RS13270 are separated by 283 nucleotidesABZR86_RS13270 and ABZR86_RS13275 are separated by 17 nucleotidesABZR86_RS13275 and ABZR86_RS13280 are separated by 81 nucleotides ABZR86_RS13255: ABZR86_RS13255 - protein-export chaperone SecB, at 2,977,136 to 2,977,627 _RS13255 ABZR86_RS13260: ABZR86_RS13260 - 50S ribosomal protein L28, at 2,977,952 to 2,978,188 _RS13260 ABZR86_RS13265: ABZR86_RS13265 - 50S ribosomal protein L33, at 2,978,202 to 2,978,369 _RS13265 ABZR86_RS13270: ABZR86_RS13270 - type II toxin-antitoxin system prevent-host-death family antitoxin, at 2,978,653 to 2,978,907 _RS13270 ABZR86_RS13275: ABZR86_RS13275 - Txe/YoeB family addiction module toxin, at 2,978,925 to 2,979,191 _RS13275 ABZR86_RS13280: ABZR86_RS13280 - prolyl oligopeptidase family serine peptidase, at 2,979,273 to 2,981,771 _RS13280 Position (kb) 2978 2979Strain fitness (log2 ratio) -2 -1 0 1 2at 2977.683 kb on + strandat 2977.683 kb on + strandat 2977.684 kb on - strandat 2977.684 kb on - strandat 2977.684 kb on - strandat 2977.684 kb on - strandat 2977.684 kb on - strandat 2977.684 kb on - strandat 2977.684 kb on - strandat 2977.684 kb on - strandat 2977.684 kb on - strandat 2977.684 kb on - strandat 2977.684 kb on - strandat 2977.931 kb on + strandat 2977.931 kb on + strandat 2977.939 kb on + strandat 2977.939 kb on + strandat 2978.186 kb on + strandat 2978.186 kb on + strandat 2978.186 kb on + strandat 2978.186 kb on + strandat 2978.186 kb on + strandat 2978.186 kb on + strandat 2978.186 kb on + strandat 2978.187 kb on - strandat 2978.187 kb on - strandat 2978.187 kb on - strandat 2978.187 kb on - strandat 2978.187 kb on - strandat 2978.262 kb on + strand, within ABZR86_RS13265at 2978.263 kb on - strand, within ABZR86_RS13265at 2978.263 kb on - strand, within ABZR86_RS13265at 2978.316 kb on + strand, within ABZR86_RS13265at 2978.316 kb on + strand, within ABZR86_RS13265at 2978.316 kb on + strand, within ABZR86_RS13265at 2978.317 kb on - strand, within ABZR86_RS13265at 2978.317 kb on - strand, within ABZR86_RS13265at 2978.317 kb on - strand, within ABZR86_RS13265at 2978.346 kb on + strand, within ABZR86_RS13265at 2978.346 kb on + strand, within ABZR86_RS13265at 2978.346 kb on + strand, within ABZR86_RS13265at 2978.347 kb on - strand, within ABZR86_RS13265at 2978.367 kb on + strandat 2978.367 kb on + strandat 2978.367 kb on + strandat 2978.368 kb on - strandat 2978.500 kb on + strandat 2978.501 kb on - strandat 2978.525 kb on + strandat 2978.525 kb on + strandat 2978.525 kb on + strandat 2978.525 kb on + strandat 2978.525 kb on + strandat 2978.525 kb on + strandat 2978.525 kb on + strandat 2978.525 kb on + strandat 2978.525 kb on + strandat 2978.525 kb on + strandat 2978.525 kb on + strandat 2978.525 kb on + strandat 2978.525 kb on + strandat 2978.526 kb on - strandat 2978.526 kb on - strandat 2978.526 kb on - strandat 2978.526 kb on - strandat 2978.526 kb on - strandat 2978.526 kb on - strandat 2978.526 kb on - strandat 2978.526 kb on - strandat 2978.526 kb on - strandat 2978.526 kb on - strandat 2978.526 kb on - strandat 2978.568 kb on + strandat 2978.568 kb on + strandat 2978.568 kb on + strandat 2978.568 kb on + strandat 2978.568 kb on + strandat 2978.569 kb on - strandat 2978.569 kb on - strandat 2978.569 kb on - strandat 2978.653 kb on - strandat 2978.653 kb on - strandat 2978.653 kb on - strandat 2978.707 kb on - strand, within ABZR86_RS13270at 2978.707 kb on - strand, within ABZR86_RS13270at 2978.707 kb on - strand, within ABZR86_RS13270at 2978.707 kb on - strand, within ABZR86_RS13270at 2978.766 kb on - strand, within ABZR86_RS13270at 2978.766 kb on - strand, within ABZR86_RS13270at 2978.786 kb on - strand, within ABZR86_RS13270at 2978.786 kb on - strand, within ABZR86_RS13270at 2978.786 kb on - strand, within ABZR86_RS13270at 2978.786 kb on - strand, within ABZR86_RS13270at 2978.786 kb on - strand, within ABZR86_RS13270at 2978.967 kb on + strand, within ABZR86_RS13275at 2978.967 kb on + strand, within ABZR86_RS13275at 2978.968 kb on - strand, within ABZR86_RS13275at 2979.129 kb on + strand, within ABZR86_RS13275at 2979.129 kb on + strand, within ABZR86_RS13275at 2979.129 kb on + strand, within ABZR86_RS13275at 2979.130 kb on - strand, within ABZR86_RS13275at 2979.130 kb on - strand, within ABZR86_RS13275at 2979.331 kb on + strandat 2979.331 kb on + strandat 2979.331 kb on + strandat 2979.332 kb on - strandat 2979.332 kb on - strandat 2979.332 kb on - strandat 2979.332 kb on - strandat 2979.332 kb on - strandat 2979.332 kb on - strandat 2979.358 kb on + strandat 2979.358 kb on + strandat 2979.359 kb on - strandat 2979.359 kb on - strandat 2979.359 kb on - strandat 2979.359 kb on - strandat 2979.359 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,977,683 + -1.9
2,977,683 + +0.1
2,977,684 - -0.0
2,977,684 - +1.0
2,977,684 - -0.7
2,977,684 - +0.2
2,977,684 - +0.7
2,977,684 - +2.2
2,977,684 - +0.5
2,977,684 - +0.2
2,977,684 - +0.2
2,977,684 - -0.2
2,977,684 - +0.3
2,977,931 + -0.2
2,977,931 + +1.2
2,977,939 + -0.9
2,977,939 + +0.1
2,978,186 + +1.0
2,978,186 + -1.2
2,978,186 + -0.6
2,978,186 + +1.6
2,978,186 + -0.2
2,978,186 + -0.7
2,978,186 + -0.6
2,978,187 - -0.3
2,978,187 - -1.1
2,978,187 - +0.2
2,978,187 - -0.0
2,978,187 - +0.0
2,978,262 + ABZR86_RS13265 0.36 -1.7
2,978,263 - ABZR86_RS13265 0.36 -0.2
2,978,263 - ABZR86_RS13265 0.36 -0.2
2,978,316 + ABZR86_RS13265 0.68 -0.1
2,978,316 + ABZR86_RS13265 0.68 -1.6
2,978,316 + ABZR86_RS13265 0.68 -0.6
2,978,317 - ABZR86_RS13265 0.68 -0.4
2,978,317 - ABZR86_RS13265 0.68 +0.4
2,978,317 - ABZR86_RS13265 0.68 -0.1
2,978,346 + ABZR86_RS13265 0.86 -1.2
2,978,346 + ABZR86_RS13265 0.86 +0.3
2,978,346 + ABZR86_RS13265 0.86 +0.5
2,978,347 - ABZR86_RS13265 0.86 -0.1
2,978,367 + +0.3
2,978,367 + -0.6
2,978,367 + -0.5
2,978,368 - -0.2
2,978,500 + +0.9
2,978,501 - -0.2
2,978,525 + -0.7
2,978,525 + +0.4
2,978,525 + -0.1
2,978,525 + +0.0
2,978,525 + -1.2
2,978,525 + +0.4
2,978,525 + +0.3
2,978,525 + -0.2
2,978,525 + +0.3
2,978,525 + +0.2
2,978,525 + -0.5
2,978,525 + -0.2
2,978,525 + -0.9
2,978,526 - -0.4
2,978,526 - -0.1
2,978,526 - -0.5
2,978,526 - -0.2
2,978,526 - +0.1
2,978,526 - +0.8
2,978,526 - +0.4
2,978,526 - -0.1
2,978,526 - +0.4
2,978,526 - +0.7
2,978,526 - +0.2
2,978,568 + +0.0
2,978,568 + -0.3
2,978,568 + -0.1
2,978,568 + +0.5
2,978,568 + -0.7
2,978,569 - +0.4
2,978,569 - -0.2
2,978,569 - -1.1
2,978,653 - -0.1
2,978,653 - +0.2
2,978,653 - +0.2
2,978,707 - ABZR86_RS13270 0.21 +0.2
2,978,707 - ABZR86_RS13270 0.21 -0.5
2,978,707 - ABZR86_RS13270 0.21 -0.1
2,978,707 - ABZR86_RS13270 0.21 -0.0
2,978,766 - ABZR86_RS13270 0.44 +0.1
2,978,766 - ABZR86_RS13270 0.44 -0.5
2,978,786 - ABZR86_RS13270 0.52 +0.3
2,978,786 - ABZR86_RS13270 0.52 -0.2
2,978,786 - ABZR86_RS13270 0.52 +0.5
2,978,786 - ABZR86_RS13270 0.52 +0.5
2,978,786 - ABZR86_RS13270 0.52 -0.3
2,978,967 + ABZR86_RS13275 0.16 +0.5
2,978,967 + ABZR86_RS13275 0.16 -0.4
2,978,968 - ABZR86_RS13275 0.16 +0.4
2,979,129 + ABZR86_RS13275 0.76 -0.1
2,979,129 + ABZR86_RS13275 0.76 -0.7
2,979,129 + ABZR86_RS13275 0.76 +0.7
2,979,130 - ABZR86_RS13275 0.77 +0.7
2,979,130 - ABZR86_RS13275 0.77 -0.4
2,979,331 + +1.2
2,979,331 + +0.7
2,979,331 + -0.2
2,979,332 - +0.1
2,979,332 - -0.1
2,979,332 - +0.1
2,979,332 - +0.6
2,979,332 - -0.5
2,979,332 - -0.1
2,979,358 + +0.3
2,979,358 + +0.3
2,979,359 - +0.1
2,979,359 - -0.0
2,979,359 - +0.3
2,979,359 - -0.1
2,979,359 - -0.4

Or see this region's nucleotide sequence