Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS04830 and ABZR86_RS04835 are separated by 161 nucleotides ABZR86_RS04835 and ABZR86_RS04840 are separated by 92 nucleotides ABZR86_RS04840 and ABZR86_RS04845 are separated by 214 nucleotides ABZR86_RS04845 and ABZR86_RS04850 are separated by 35 nucleotides
ABZR86_RS04830: ABZR86_RS04830 - LysR family transcriptional regulator, at 1,080,482 to 1,081,399
_RS04830
ABZR86_RS04835: ABZR86_RS04835 - hypothetical protein, at 1,081,561 to 1,081,920
_RS04835
ABZR86_RS04840: ABZR86_RS04840 - serine hydrolase, at 1,082,013 to 1,083,386
_RS04840
ABZR86_RS04845: ABZR86_RS04845 - hypothetical protein, at 1,083,601 to 1,084,062
_RS04845
ABZR86_RS04850: ABZR86_RS04850 - LytTR family DNA-binding domain-containing protein, at 1,084,098 to 1,084,853
_RS04850
Position (kb) 1082
1083
1084 Strain fitness (log2 ratio) -2
-1
0
1 at 1081.106 kb on + strand, within ABZR86_RS04830 at 1081.106 kb on + strand, within ABZR86_RS04830 at 1081.106 kb on + strand, within ABZR86_RS04830 at 1081.107 kb on - strand, within ABZR86_RS04830 at 1081.107 kb on - strand, within ABZR86_RS04830 at 1081.107 kb on - strand, within ABZR86_RS04830 at 1081.313 kb on + strand at 1081.313 kb on + strand at 1081.313 kb on + strand at 1081.314 kb on - strand at 1081.322 kb on + strand at 1081.323 kb on - strand at 1081.550 kb on + strand at 1081.574 kb on + strand at 1081.575 kb on - strand at 1081.732 kb on + strand, within ABZR86_RS04835 at 1081.792 kb on + strand, within ABZR86_RS04835 at 1081.793 kb on - strand, within ABZR86_RS04835 at 1081.895 kb on - strand at 1081.906 kb on + strand at 1081.907 kb on - strand at 1081.908 kb on + strand at 1082.021 kb on - strand at 1082.021 kb on - strand at 1082.068 kb on + strand at 1082.128 kb on + strand at 1082.128 kb on + strand at 1082.129 kb on - strand at 1082.129 kb on - strand at 1082.377 kb on + strand, within ABZR86_RS04840 at 1082.377 kb on + strand, within ABZR86_RS04840 at 1082.377 kb on + strand, within ABZR86_RS04840 at 1082.377 kb on + strand, within ABZR86_RS04840 at 1082.378 kb on - strand, within ABZR86_RS04840 at 1082.378 kb on - strand, within ABZR86_RS04840 at 1082.378 kb on - strand, within ABZR86_RS04840 at 1082.378 kb on - strand, within ABZR86_RS04840 at 1082.378 kb on - strand, within ABZR86_RS04840 at 1082.378 kb on - strand, within ABZR86_RS04840 at 1082.378 kb on - strand, within ABZR86_RS04840 at 1082.494 kb on - strand, within ABZR86_RS04840 at 1082.542 kb on + strand, within ABZR86_RS04840 at 1082.543 kb on - strand, within ABZR86_RS04840 at 1083.100 kb on + strand, within ABZR86_RS04840 at 1083.100 kb on + strand, within ABZR86_RS04840 at 1083.100 kb on + strand, within ABZR86_RS04840 at 1083.535 kb on - strand at 1083.623 kb on - strand at 1083.623 kb on - strand at 1083.623 kb on - strand at 1083.623 kb on - strand at 1083.933 kb on + strand, within ABZR86_RS04845 at 1084.099 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,081,106 + ABZR86_RS04830 0.68 -0.9 1,081,106 + ABZR86_RS04830 0.68 -0.1 1,081,106 + ABZR86_RS04830 0.68 -1.0 1,081,107 - ABZR86_RS04830 0.68 -0.1 1,081,107 - ABZR86_RS04830 0.68 -0.1 1,081,107 - ABZR86_RS04830 0.68 -1.7 1,081,313 + -0.5 1,081,313 + -0.5 1,081,313 + +0.3 1,081,314 - +0.5 1,081,322 + +0.3 1,081,323 - -0.1 1,081,550 + -1.8 1,081,574 + +0.1 1,081,575 - +0.0 1,081,732 + ABZR86_RS04835 0.47 -0.4 1,081,792 + ABZR86_RS04835 0.64 -0.3 1,081,793 - ABZR86_RS04835 0.64 +0.3 1,081,895 - -1.0 1,081,906 + +0.9 1,081,907 - -0.3 1,081,908 + +0.1 1,082,021 - +0.3 1,082,021 - +0.4 1,082,068 + -0.1 1,082,128 + +0.0 1,082,128 + -0.2 1,082,129 - +0.3 1,082,129 - +0.4 1,082,377 + ABZR86_RS04840 0.26 +0.1 1,082,377 + ABZR86_RS04840 0.26 +0.2 1,082,377 + ABZR86_RS04840 0.26 -0.5 1,082,377 + ABZR86_RS04840 0.26 +0.2 1,082,378 - ABZR86_RS04840 0.27 +0.5 1,082,378 - ABZR86_RS04840 0.27 +0.5 1,082,378 - ABZR86_RS04840 0.27 -0.1 1,082,378 - ABZR86_RS04840 0.27 +0.1 1,082,378 - ABZR86_RS04840 0.27 +0.3 1,082,378 - ABZR86_RS04840 0.27 +0.4 1,082,378 - ABZR86_RS04840 0.27 -0.3 1,082,494 - ABZR86_RS04840 0.35 +0.9 1,082,542 + ABZR86_RS04840 0.39 -0.0 1,082,543 - ABZR86_RS04840 0.39 +0.3 1,083,100 + ABZR86_RS04840 0.79 +0.4 1,083,100 + ABZR86_RS04840 0.79 +0.3 1,083,100 + ABZR86_RS04840 0.79 -0.1 1,083,535 - +0.0 1,083,623 - +0.2 1,083,623 - +0.2 1,083,623 - -0.4 1,083,623 - +0.6 1,083,933 + ABZR86_RS04845 0.72 +0.6 1,084,099 + -1.3
Or see this region's nucleotide sequence