Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS01895 and ABZR86_RS01900 are separated by 117 nucleotides ABZR86_RS01900 and ABZR86_RS01905 are separated by 12 nucleotides
ABZR86_RS01895: ABZR86_RS01895 - MFS transporter, at 411,935 to 413,248
_RS01895
ABZR86_RS01900: ABZR86_RS01900 - DUF2461 domain-containing protein, at 413,366 to 414,052
_RS01900
ABZR86_RS01905: ABZR86_RS01905 - exodeoxyribonuclease I, at 414,065 to 415,516
_RS01905
Position (kb) 413
414
415 Strain fitness (log2 ratio) -2
-1
0
1 at 412.523 kb on + strand, within ABZR86_RS01895 at 412.524 kb on - strand, within ABZR86_RS01895 at 412.925 kb on + strand, within ABZR86_RS01895 at 412.926 kb on - strand, within ABZR86_RS01895 at 412.926 kb on - strand, within ABZR86_RS01895 at 412.926 kb on - strand, within ABZR86_RS01895 at 412.977 kb on - strand, within ABZR86_RS01895 at 412.977 kb on - strand, within ABZR86_RS01895 at 413.078 kb on + strand, within ABZR86_RS01895 at 413.078 kb on + strand, within ABZR86_RS01895 at 413.079 kb on - strand, within ABZR86_RS01895 at 413.079 kb on - strand, within ABZR86_RS01895 at 413.129 kb on + strand at 413.130 kb on - strand at 413.130 kb on - strand at 413.168 kb on + strand at 413.168 kb on + strand at 413.168 kb on + strand at 413.169 kb on - strand at 413.210 kb on + strand at 413.264 kb on - strand at 413.348 kb on + strand at 413.348 kb on + strand at 413.386 kb on + strand at 413.397 kb on + strand at 413.397 kb on + strand at 413.424 kb on + strand at 413.424 kb on + strand at 413.424 kb on + strand at 413.425 kb on - strand at 413.425 kb on - strand at 413.425 kb on - strand at 413.425 kb on - strand at 413.425 kb on - strand at 413.722 kb on + strand, within ABZR86_RS01900 at 413.723 kb on - strand, within ABZR86_RS01900 at 413.723 kb on - strand, within ABZR86_RS01900 at 413.730 kb on + strand, within ABZR86_RS01900 at 413.730 kb on + strand, within ABZR86_RS01900 at 413.730 kb on + strand, within ABZR86_RS01900 at 413.730 kb on + strand, within ABZR86_RS01900 at 413.731 kb on - strand, within ABZR86_RS01900 at 413.731 kb on - strand, within ABZR86_RS01900 at 413.731 kb on - strand, within ABZR86_RS01900 at 413.796 kb on + strand, within ABZR86_RS01900 at 413.797 kb on - strand, within ABZR86_RS01900 at 413.797 kb on - strand, within ABZR86_RS01900 at 413.797 kb on - strand, within ABZR86_RS01900 at 414.039 kb on + strand at 414.327 kb on + strand, within ABZR86_RS01905 at 414.433 kb on - strand, within ABZR86_RS01905 at 414.753 kb on + strand, within ABZR86_RS01905 at 414.753 kb on + strand, within ABZR86_RS01905 at 414.754 kb on - strand, within ABZR86_RS01905
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 412,523 + ABZR86_RS01895 0.45 -0.2 412,524 - ABZR86_RS01895 0.45 +0.0 412,925 + ABZR86_RS01895 0.75 -0.2 412,926 - ABZR86_RS01895 0.75 -0.2 412,926 - ABZR86_RS01895 0.75 -0.5 412,926 - ABZR86_RS01895 0.75 -0.4 412,977 - ABZR86_RS01895 0.79 -0.0 412,977 - ABZR86_RS01895 0.79 +0.2 413,078 + ABZR86_RS01895 0.87 +0.1 413,078 + ABZR86_RS01895 0.87 +0.5 413,079 - ABZR86_RS01895 0.87 -0.3 413,079 - ABZR86_RS01895 0.87 +0.2 413,129 + +0.8 413,130 - +0.0 413,130 - -0.3 413,168 + -0.1 413,168 + +0.3 413,168 + -0.5 413,169 - +0.2 413,210 + +0.0 413,264 - +0.1 413,348 + -0.6 413,348 + -0.2 413,386 + -1.6 413,397 + -0.7 413,397 + -0.4 413,424 + -2.3 413,424 + +0.1 413,424 + -0.4 413,425 - -0.7 413,425 - -0.1 413,425 - -0.6 413,425 - +0.2 413,425 - +0.7 413,722 + ABZR86_RS01900 0.52 +0.1 413,723 - ABZR86_RS01900 0.52 -0.1 413,723 - ABZR86_RS01900 0.52 +0.0 413,730 + ABZR86_RS01900 0.53 +1.0 413,730 + ABZR86_RS01900 0.53 -0.5 413,730 + ABZR86_RS01900 0.53 -0.2 413,730 + ABZR86_RS01900 0.53 +0.8 413,731 - ABZR86_RS01900 0.53 +0.2 413,731 - ABZR86_RS01900 0.53 +0.1 413,731 - ABZR86_RS01900 0.53 -0.3 413,796 + ABZR86_RS01900 0.63 -0.3 413,797 - ABZR86_RS01900 0.63 -0.5 413,797 - ABZR86_RS01900 0.63 -0.0 413,797 - ABZR86_RS01900 0.63 -0.1 414,039 + -0.0 414,327 + ABZR86_RS01905 0.18 +0.1 414,433 - ABZR86_RS01905 0.25 -0.3 414,753 + ABZR86_RS01905 0.47 -0.5 414,753 + ABZR86_RS01905 0.47 +0.2 414,754 - ABZR86_RS01905 0.47 +0.6
Or see this region's nucleotide sequence