Experiment: Chlorite 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3496 and Shew_3497 are separated by 239 nucleotides Shew_3497 and rpoZ are separated by 59 nucleotides rpoZ and Shew_3499 are separated by 13 nucleotides
Shew_3496: Shew_3496 - hypothetical protein (RefSeq), at 4,182,237 to 4,183,430
_3496
Shew_3497: Shew_3497 - guanylate kinase (RefSeq), at 4,183,670 to 4,184,293
_3497
Shew_3498: rpoZ - DNA-directed RNA polymerase subunit omega (RefSeq), at 4,184,353 to 4,184,634
rpoZ
Shew_3499: Shew_3499 - bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase (RefSeq), at 4,184,648 to 4,186,753
_3499
Position (kb) 4183
4184
4185 Strain fitness (log2 ratio) -1
0
1
2 at 4182.678 kb on - strand, within Shew_3496 at 4182.678 kb on - strand, within Shew_3496 at 4182.834 kb on + strand, within Shew_3496 at 4182.882 kb on - strand, within Shew_3496 at 4183.045 kb on - strand, within Shew_3496 at 4183.068 kb on - strand, within Shew_3496 at 4183.068 kb on - strand, within Shew_3496 at 4183.082 kb on + strand, within Shew_3496 at 4183.159 kb on + strand, within Shew_3496 at 4183.162 kb on - strand, within Shew_3496 at 4183.174 kb on + strand, within Shew_3496 at 4183.179 kb on + strand, within Shew_3496 at 4183.442 kb on + strand at 4183.519 kb on + strand at 4183.611 kb on + strand at 4184.446 kb on + strand, within rpoZ at 4184.556 kb on + strand, within rpoZ
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 200 mM remove 4,182,678 - Shew_3496 0.37 -0.6 4,182,678 - Shew_3496 0.37 -0.1 4,182,834 + Shew_3496 0.50 +0.5 4,182,882 - Shew_3496 0.54 +0.4 4,183,045 - Shew_3496 0.68 -0.2 4,183,068 - Shew_3496 0.70 +0.6 4,183,068 - Shew_3496 0.70 +0.4 4,183,082 + Shew_3496 0.71 -0.0 4,183,159 + Shew_3496 0.77 -0.1 4,183,162 - Shew_3496 0.77 -1.7 4,183,174 + Shew_3496 0.78 -0.5 4,183,179 + Shew_3496 0.79 +0.0 4,183,442 + -0.2 4,183,519 + +0.2 4,183,611 + +1.0 4,184,446 + rpoZ Shew_3498 0.33 +1.0 4,184,556 + rpoZ Shew_3498 0.72 +2.5
Or see this region's nucleotide sequence