Strain Fitness in Shewanella loihica PV-4 around Shew_3310

Experiment: Chlorite 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3308 and Shew_3309 overlap by 14 nucleotidesShew_3309 and Shew_3310 overlap by 4 nucleotidesShew_3310 and Shew_3311 are separated by 134 nucleotides Shew_3308: Shew_3308 - hypothetical protein (RefSeq), at 3,949,641 to 3,950,198 _3308 Shew_3309: Shew_3309 - OstA family protein (RefSeq), at 3,950,185 to 3,950,730 _3309 Shew_3310: Shew_3310 - ABC transporter-related protein (RefSeq), at 3,950,727 to 3,951,458 _3310 Shew_3311: Shew_3311 - RNA polymerase factor sigma-54 (RefSeq), at 3,951,593 to 3,953,080 _3311 Position (kb) 3950 3951 3952Strain fitness (log2 ratio) -1 0 1 2 3at 3951.933 kb on - strand, within Shew_3311at 3952.179 kb on - strand, within Shew_3311at 3952.193 kb on + strand, within Shew_3311

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 200 mM
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3,951,933 - Shew_3311 0.23 +2.9
3,952,179 - Shew_3311 0.39 +3.1
3,952,193 + Shew_3311 0.40 +3.1

Or see this region's nucleotide sequence