Experiment: Chlorite 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2921 and Shew_2922 are separated by 198 nucleotides Shew_2922 and Shew_2923 are separated by 98 nucleotides Shew_2923 and Shew_2924 are separated by 241 nucleotides
Shew_2921: Shew_2921 - UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase (RefSeq), at 3,459,650 to 3,460,843
_2921
Shew_2922: Shew_2922 - hypothetical protein (RefSeq), at 3,461,042 to 3,461,344
_2922
Shew_2923: Shew_2923 - tRNA-i(6)A37 thiotransferase enzyme MiaB (RefSeq), at 3,461,443 to 3,462,867
_2923
Shew_2924: Shew_2924 - PhoH family protein (RefSeq), at 3,463,109 to 3,464,152
_2924
Position (kb)
3461
3462
3463 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3460.829 kb on - strand at 3461.144 kb on - strand, within Shew_2922 at 3461.205 kb on + strand, within Shew_2922 at 3461.236 kb on + strand, within Shew_2922 at 3461.498 kb on + strand at 3461.660 kb on + strand, within Shew_2923 at 3461.948 kb on - strand, within Shew_2923 at 3461.954 kb on + strand, within Shew_2923 at 3462.023 kb on - strand, within Shew_2923 at 3462.253 kb on + strand, within Shew_2923 at 3462.454 kb on - strand, within Shew_2923
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 200 mM remove 3,460,829 - -3.3 3,461,144 - Shew_2922 0.34 -0.0 3,461,205 + Shew_2922 0.54 -1.8 3,461,236 + Shew_2922 0.64 +0.4 3,461,498 + -2.8 3,461,660 + Shew_2923 0.15 -1.6 3,461,948 - Shew_2923 0.35 -1.8 3,461,954 + Shew_2923 0.36 -1.6 3,462,023 - Shew_2923 0.41 -2.1 3,462,253 + Shew_2923 0.57 -1.9 3,462,454 - Shew_2923 0.71 -0.5
Or see this region's nucleotide sequence