Experiment: Chlorite 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2866 and Shew_2867 overlap by 4 nucleotides Shew_2867 and Shew_2868 are separated by 524 nucleotides
Shew_2866: Shew_2866 - acyl-CoA synthetase (RefSeq), at 3,398,900 to 3,400,609
_2866
Shew_2867: Shew_2867 - pyruvate carboxylase, propionyl-CoA carboxylase (RefSeq), at 3,400,606 to 3,403,890
_2867
Shew_2868: Shew_2868 - acyl-CoA dehydrogenase domain-containing protein (RefSeq), at 3,404,415 to 3,406,223
_2868
Position (kb)
3400
3401
3402
3403
3404 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3399.977 kb on - strand, within Shew_2866 at 3400.176 kb on + strand, within Shew_2866 at 3400.176 kb on + strand, within Shew_2866 at 3400.176 kb on + strand, within Shew_2866 at 3400.184 kb on - strand, within Shew_2866 at 3400.184 kb on - strand, within Shew_2866 at 3400.186 kb on + strand, within Shew_2866 at 3400.666 kb on + strand at 3400.666 kb on + strand at 3400.674 kb on - strand at 3400.676 kb on + strand at 3400.818 kb on + strand at 3401.035 kb on - strand, within Shew_2867 at 3401.143 kb on - strand, within Shew_2867 at 3401.171 kb on - strand, within Shew_2867 at 3401.290 kb on - strand, within Shew_2867 at 3401.305 kb on - strand, within Shew_2867 at 3401.645 kb on + strand, within Shew_2867 at 3401.720 kb on + strand, within Shew_2867 at 3401.763 kb on - strand, within Shew_2867 at 3401.825 kb on - strand, within Shew_2867 at 3401.911 kb on - strand, within Shew_2867 at 3402.886 kb on + strand, within Shew_2867 at 3403.382 kb on - strand, within Shew_2867 at 3403.513 kb on - strand, within Shew_2867 at 3403.546 kb on - strand, within Shew_2867 at 3403.674 kb on + strand at 3403.934 kb on + strand at 3403.942 kb on - strand at 3404.079 kb on + strand at 3404.079 kb on + strand at 3404.394 kb on + strand at 3404.394 kb on + strand at 3404.402 kb on - strand at 3404.402 kb on - strand at 3404.402 kb on - strand at 3404.708 kb on + strand, within Shew_2868 at 3404.727 kb on - strand, within Shew_2868 at 3404.825 kb on + strand, within Shew_2868
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 200 mM remove 3,399,977 - Shew_2866 0.63 +0.3 3,400,176 + Shew_2866 0.75 -0.5 3,400,176 + Shew_2866 0.75 +0.1 3,400,176 + Shew_2866 0.75 -0.3 3,400,184 - Shew_2866 0.75 -0.1 3,400,184 - Shew_2866 0.75 +0.2 3,400,186 + Shew_2866 0.75 -1.5 3,400,666 + +0.7 3,400,666 + -0.4 3,400,674 - -0.9 3,400,676 + -0.4 3,400,818 + -0.3 3,401,035 - Shew_2867 0.13 -0.1 3,401,143 - Shew_2867 0.16 -0.7 3,401,171 - Shew_2867 0.17 -0.1 3,401,290 - Shew_2867 0.21 +0.1 3,401,305 - Shew_2867 0.21 -0.3 3,401,645 + Shew_2867 0.32 +0.0 3,401,720 + Shew_2867 0.34 -3.3 3,401,763 - Shew_2867 0.35 -0.5 3,401,825 - Shew_2867 0.37 -0.1 3,401,911 - Shew_2867 0.40 +0.1 3,402,886 + Shew_2867 0.69 +0.1 3,403,382 - Shew_2867 0.85 -0.3 3,403,513 - Shew_2867 0.88 +0.1 3,403,546 - Shew_2867 0.89 -0.4 3,403,674 + +0.0 3,403,934 + +0.3 3,403,942 - +1.4 3,404,079 + -0.2 3,404,079 + +0.0 3,404,394 + -0.3 3,404,394 + +0.1 3,404,402 - -1.2 3,404,402 - +0.7 3,404,402 - -1.3 3,404,708 + Shew_2868 0.16 +0.5 3,404,727 - Shew_2868 0.17 -0.6 3,404,825 + Shew_2868 0.23 +0.5
Or see this region's nucleotide sequence