Experiment: Chlorite 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2444 and Shew_2445 are separated by 144 nucleotides Shew_2445 and Shew_2446 are separated by 126 nucleotides Shew_2446 and Shew_2447 are separated by 234 nucleotides Shew_2447 and nrdG are separated by 158 nucleotides
Shew_2444: Shew_2444 - hypothetical protein (RefSeq), at 2,874,607 to 2,874,987
_2444
Shew_2445: Shew_2445 - hypothetical protein (RefSeq), at 2,875,132 to 2,875,608
_2445
Shew_2446: Shew_2446 - GTP cyclohydrolase II (RefSeq), at 2,875,735 to 2,876,352
_2446
Shew_2447: Shew_2447 - hypothetical protein (RefSeq), at 2,876,587 to 2,876,943
_2447
Shew_2448: nrdG - anaerobic ribonucleotide reductase-activating protein (RefSeq), at 2,877,102 to 2,877,575
nrdG
Position (kb)
2875
2876
2877 Strain fitness (log2 ratio)
-1
0
1 at 2875.269 kb on + strand, within Shew_2445 at 2875.557 kb on + strand, within Shew_2445 at 2875.577 kb on - strand at 2876.623 kb on - strand, within Shew_2447 at 2876.719 kb on + strand, within Shew_2447 at 2876.722 kb on - strand, within Shew_2447 at 2876.739 kb on - strand, within Shew_2447 at 2876.752 kb on - strand, within Shew_2447 at 2877.294 kb on - strand, within nrdG
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 200 mM remove 2,875,269 + Shew_2445 0.29 -0.9 2,875,557 + Shew_2445 0.89 -0.2 2,875,577 - +1.1 2,876,623 - Shew_2447 0.10 +0.7 2,876,719 + Shew_2447 0.37 +0.4 2,876,722 - Shew_2447 0.38 +0.3 2,876,739 - Shew_2447 0.43 +0.7 2,876,752 - Shew_2447 0.46 -0.4 2,877,294 - nrdG Shew_2448 0.41 +0.1
Or see this region's nucleotide sequence