Strain Fitness in Shewanella loihica PV-4 around Shew_2241

Experiment: Chlorite 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2239 and Shew_2240 are separated by 0 nucleotidesShew_2240 and Shew_2241 are separated by 102 nucleotidesShew_2241 and Shew_2242 are separated by 441 nucleotides Shew_2239: Shew_2239 - hypothetical protein (RefSeq), at 2,616,973 to 2,617,716 _2239 Shew_2240: Shew_2240 - hypothetical protein (RefSeq), at 2,617,717 to 2,618,553 _2240 Shew_2241: Shew_2241 - hypothetical protein (RefSeq), at 2,618,656 to 2,619,096 _2241 Shew_2242: Shew_2242 - dihydrouridine synthase, DuS (RefSeq), at 2,619,538 to 2,620,467 _2242 Position (kb) 2618 2619 2620Strain fitness (log2 ratio) -2 -1 0 1at 2617.748 kb on - strandat 2618.542 kb on - strandat 2618.621 kb on + strandat 2618.810 kb on + strand, within Shew_2241at 2619.013 kb on + strand, within Shew_2241at 2619.063 kb on - strandat 2619.148 kb on - strandat 2619.361 kb on - strandat 2619.376 kb on - strandat 2619.395 kb on - strandat 2619.441 kb on - strandat 2619.933 kb on + strand, within Shew_2242at 2620.036 kb on + strand, within Shew_2242

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 200 mM
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2,617,748 - -0.0
2,618,542 - -1.5
2,618,621 + +0.6
2,618,810 + Shew_2241 0.35 -2.4
2,619,013 + Shew_2241 0.81 +1.3
2,619,063 - -1.8
2,619,148 - -1.1
2,619,361 - -2.2
2,619,376 - -0.3
2,619,395 - +0.4
2,619,441 - +0.0
2,619,933 + Shew_2242 0.42 -0.7
2,620,036 + Shew_2242 0.54 +0.6

Or see this region's nucleotide sequence