Strain Fitness in Shewanella loihica PV-4 around Shew_1969

Experiment: Chlorite 200 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_1968 and Shew_1969 are separated by 244 nucleotidesShew_1969 and Shew_1970 overlap by 8 nucleotides Shew_1968: Shew_1968 - beta-lactamase (RefSeq), at 2,274,225 to 2,275,367 _1968 Shew_1969: Shew_1969 - two component LuxR family transcriptional regulator (RefSeq), at 2,275,612 to 2,276,211 _1969 Shew_1970: Shew_1970 - histidine kinase (RefSeq), at 2,276,204 to 2,277,934 _1970 Position (kb) 2275 2276 2277Strain fitness (log2 ratio) -1 0 1at 2274.625 kb on + strand, within Shew_1968at 2275.879 kb on + strand, within Shew_1969at 2276.374 kb on + strandat 2276.584 kb on + strand, within Shew_1970at 2276.764 kb on + strand, within Shew_1970at 2276.945 kb on - strand, within Shew_1970at 2277.195 kb on + strand, within Shew_1970

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 200 mM
remove
2,274,625 + Shew_1968 0.35 +0.4
2,275,879 + Shew_1969 0.45 -0.4
2,276,374 + +0.6
2,276,584 + Shew_1970 0.22 +0.4
2,276,764 + Shew_1970 0.32 +1.0
2,276,945 - Shew_1970 0.43 -0.1
2,277,195 + Shew_1970 0.57 -0.2

Or see this region's nucleotide sequence