Experiment: Chlorite 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0914 and Shew_0915 are separated by 140 nucleotides Shew_0915 and Shew_0916 overlap by 11 nucleotides Shew_0916 and Shew_0917 are separated by 160 nucleotides
Shew_0914: Shew_0914 - NADPH-dependent FMN reductase (RefSeq), at 1,034,216 to 1,034,821
_0914
Shew_0915: Shew_0915 - putative transcriptional regulator (RefSeq), at 1,034,962 to 1,035,618
_0915
Shew_0916: Shew_0916 - pseudouridine synthase (RefSeq), at 1,035,608 to 1,036,318
_0916
Shew_0917: Shew_0917 - LysR family transcriptional regulator (RefSeq), at 1,036,479 to 1,037,444
_0917
Position (kb)
1035
1036
1037 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1034.615 kb on - strand, within Shew_0914 at 1034.695 kb on + strand, within Shew_0914 at 1035.682 kb on + strand, within Shew_0916 at 1035.842 kb on + strand, within Shew_0916 at 1036.023 kb on + strand, within Shew_0916 at 1036.138 kb on + strand, within Shew_0916 at 1036.146 kb on - strand, within Shew_0916 at 1036.153 kb on + strand, within Shew_0916 at 1036.833 kb on - strand, within Shew_0917 at 1036.991 kb on - strand, within Shew_0917 at 1037.261 kb on - strand, within Shew_0917
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 200 mM remove 1,034,615 - Shew_0914 0.66 +0.2 1,034,695 + Shew_0914 0.79 -0.4 1,035,682 + Shew_0916 0.10 -1.7 1,035,842 + Shew_0916 0.33 -0.1 1,036,023 + Shew_0916 0.58 -0.3 1,036,138 + Shew_0916 0.75 +0.2 1,036,146 - Shew_0916 0.76 -1.1 1,036,153 + Shew_0916 0.77 +0.1 1,036,833 - Shew_0917 0.37 +0.4 1,036,991 - Shew_0917 0.53 -0.7 1,037,261 - Shew_0917 0.81 -2.9
Or see this region's nucleotide sequence