Experiment: Chlorite 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0439 and Shew_0440 are separated by 8 nucleotides Shew_0440 and Shew_0441 are separated by 130 nucleotides Shew_0441 and Shew_0442 are separated by 133 nucleotides
Shew_0439: Shew_0439 - CheD, stimulates methylation of MCP proteins (RefSeq), at 489,529 to 490,161
_0439
Shew_0440: Shew_0440 - methyltransferase type 12 (RefSeq), at 490,170 to 491,024
_0440
Shew_0441: Shew_0441 - dehydratase (RefSeq), at 491,155 to 491,994
_0441
Shew_0442: Shew_0442 - aldo/keto reductase (RefSeq), at 492,128 to 493,018
_0442
Position (kb) 491
492 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 490.214 kb on - strand at 490.405 kb on - strand, within Shew_0440 at 490.551 kb on - strand, within Shew_0440 at 490.600 kb on - strand, within Shew_0440 at 490.607 kb on + strand, within Shew_0440 at 490.742 kb on + strand, within Shew_0440 at 490.742 kb on + strand, within Shew_0440 at 490.742 kb on + strand, within Shew_0440 at 491.118 kb on - strand at 491.166 kb on + strand at 491.231 kb on + strand at 491.246 kb on + strand, within Shew_0441 at 491.254 kb on - strand, within Shew_0441 at 491.254 kb on - strand, within Shew_0441 at 491.254 kb on - strand, within Shew_0441 at 491.254 kb on - strand, within Shew_0441 at 491.254 kb on - strand, within Shew_0441 at 491.292 kb on + strand, within Shew_0441 at 491.300 kb on - strand, within Shew_0441 at 491.478 kb on - strand, within Shew_0441 at 491.559 kb on + strand, within Shew_0441 at 491.566 kb on - strand, within Shew_0441 at 491.621 kb on + strand, within Shew_0441 at 491.660 kb on + strand, within Shew_0441 at 491.793 kb on + strand, within Shew_0441 at 491.843 kb on - strand, within Shew_0441 at 491.843 kb on - strand, within Shew_0441 at 492.252 kb on - strand, within Shew_0442 at 492.401 kb on + strand, within Shew_0442 at 492.409 kb on - strand, within Shew_0442 at 492.460 kb on + strand, within Shew_0442 at 492.468 kb on - strand, within Shew_0442 at 492.655 kb on + strand, within Shew_0442 at 492.751 kb on + strand, within Shew_0442 at 492.870 kb on + strand, within Shew_0442
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 200 mM remove 490,214 - +0.7 490,405 - Shew_0440 0.27 +0.2 490,551 - Shew_0440 0.45 +1.1 490,600 - Shew_0440 0.50 -0.3 490,607 + Shew_0440 0.51 -0.5 490,742 + Shew_0440 0.67 +0.3 490,742 + Shew_0440 0.67 +0.9 490,742 + Shew_0440 0.67 -0.7 491,118 - -2.1 491,166 + -0.7 491,231 + -1.4 491,246 + Shew_0441 0.11 -1.3 491,254 - Shew_0441 0.12 -1.4 491,254 - Shew_0441 0.12 -2.4 491,254 - Shew_0441 0.12 -2.6 491,254 - Shew_0441 0.12 -1.4 491,254 - Shew_0441 0.12 -2.2 491,292 + Shew_0441 0.16 -2.0 491,300 - Shew_0441 0.17 -1.1 491,478 - Shew_0441 0.38 -4.0 491,559 + Shew_0441 0.48 -2.4 491,566 - Shew_0441 0.49 -0.8 491,621 + Shew_0441 0.55 -1.9 491,660 + Shew_0441 0.60 -1.2 491,793 + Shew_0441 0.76 -1.4 491,843 - Shew_0441 0.82 -1.9 491,843 - Shew_0441 0.82 -2.3 492,252 - Shew_0442 0.14 +0.4 492,401 + Shew_0442 0.31 +0.5 492,409 - Shew_0442 0.32 -0.2 492,460 + Shew_0442 0.37 +0.5 492,468 - Shew_0442 0.38 -0.7 492,655 + Shew_0442 0.59 +1.0 492,751 + Shew_0442 0.70 +0.2 492,870 + Shew_0442 0.83 +0.1
Or see this region's nucleotide sequence