Strain Fitness in Shewanella loihica PV-4 around Shew_0038

Experiment: Chlorite 200 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_0037 and Shew_0038 are separated by 162 nucleotidesShew_0038 and Shew_0039 are separated by 1 nucleotides Shew_0037: Shew_0037 - phosphoesterase, PA-phosphatase related (RefSeq), at 42,482 to 43,300 _0037 Shew_0038: Shew_0038 - excinuclease ABC subunit C (RefSeq), at 43,463 to 43,756 _0038 Shew_0039: Shew_0039 - oligopeptidase B (RefSeq), at 43,758 to 45,818 _0039 Position (kb) 43 44Strain fitness (log2 ratio) -2 -1 0 1at 42.513 kb on - strandat 42.637 kb on + strand, within Shew_0037at 42.677 kb on - strand, within Shew_0037at 42.798 kb on - strand, within Shew_0037at 42.840 kb on - strand, within Shew_0037at 42.869 kb on + strand, within Shew_0037at 43.138 kb on - strand, within Shew_0037at 43.192 kb on - strand, within Shew_0037at 43.586 kb on - strand, within Shew_0038at 43.621 kb on - strand, within Shew_0038at 43.683 kb on + strand, within Shew_0038at 43.691 kb on - strand, within Shew_0038at 43.726 kb on + strand, within Shew_0038at 43.940 kb on + strandat 43.955 kb on + strandat 43.955 kb on + strandat 44.135 kb on - strand, within Shew_0039at 44.256 kb on + strand, within Shew_0039at 44.554 kb on + strand, within Shew_0039at 44.694 kb on + strand, within Shew_0039at 44.719 kb on - strand, within Shew_0039

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 200 mM
remove
42,513 - -1.2
42,637 + Shew_0037 0.19 -0.3
42,677 - Shew_0037 0.24 -0.1
42,798 - Shew_0037 0.39 -0.2
42,840 - Shew_0037 0.44 +0.6
42,869 + Shew_0037 0.47 -0.7
43,138 - Shew_0037 0.80 -0.0
43,192 - Shew_0037 0.87 +0.4
43,586 - Shew_0038 0.42 -0.8
43,621 - Shew_0038 0.54 -2.0
43,683 + Shew_0038 0.75 +0.5
43,691 - Shew_0038 0.78 +0.1
43,726 + Shew_0038 0.89 -0.5
43,940 + -0.1
43,955 + -0.0
43,955 + -0.7
44,135 - Shew_0039 0.18 -0.5
44,256 + Shew_0039 0.24 -0.7
44,554 + Shew_0039 0.39 -0.4
44,694 + Shew_0039 0.45 +0.2
44,719 - Shew_0039 0.47 +1.0

Or see this region's nucleotide sequence