Experiment: Cephalothin 4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_711 and Pf6N2E2_712 are separated by 4 nucleotides Pf6N2E2_712 and Pf6N2E2_713 overlap by 4 nucleotides
Pf6N2E2_711 - Nitric oxide reductase activation protein NorD, at 814,866 to 816,704
_711
Pf6N2E2_712 - hypothetical protein, at 816,709 to 816,909
_712
Pf6N2E2_713 - Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family), at 816,906 to 817,589
_713
Position (kb) 816
817 Strain fitness (log2 ratio) -2
-1
0
1
2 at 815.744 kb on + strand, within Pf6N2E2_711 at 815.745 kb on - strand, within Pf6N2E2_711 at 815.898 kb on - strand, within Pf6N2E2_711 at 816.162 kb on - strand, within Pf6N2E2_711 at 816.267 kb on + strand, within Pf6N2E2_711 at 816.267 kb on + strand, within Pf6N2E2_711 at 816.267 kb on + strand, within Pf6N2E2_711 at 816.268 kb on - strand, within Pf6N2E2_711 at 816.268 kb on - strand, within Pf6N2E2_711 at 816.381 kb on + strand, within Pf6N2E2_711 at 816.381 kb on + strand, within Pf6N2E2_711 at 816.381 kb on + strand, within Pf6N2E2_711 at 816.381 kb on + strand, within Pf6N2E2_711 at 816.382 kb on - strand, within Pf6N2E2_711 at 816.382 kb on - strand, within Pf6N2E2_711 at 816.382 kb on - strand, within Pf6N2E2_711 at 816.382 kb on - strand, within Pf6N2E2_711 at 816.495 kb on + strand, within Pf6N2E2_711 at 816.495 kb on + strand, within Pf6N2E2_711 at 816.495 kb on + strand, within Pf6N2E2_711 at 816.601 kb on - strand at 816.609 kb on + strand at 816.609 kb on + strand at 816.609 kb on + strand at 816.609 kb on + strand at 816.609 kb on + strand at 816.610 kb on - strand at 816.610 kb on - strand at 816.610 kb on - strand at 816.610 kb on - strand at 816.610 kb on - strand at 816.610 kb on - strand at 816.631 kb on - strand at 816.681 kb on + strand at 816.682 kb on - strand at 816.884 kb on + strand, within Pf6N2E2_712 at 816.884 kb on + strand, within Pf6N2E2_712 at 816.885 kb on - strand, within Pf6N2E2_712 at 816.885 kb on - strand, within Pf6N2E2_712 at 817.243 kb on + strand, within Pf6N2E2_713 at 817.243 kb on + strand, within Pf6N2E2_713 at 817.243 kb on + strand, within Pf6N2E2_713 at 817.243 kb on + strand, within Pf6N2E2_713 at 817.243 kb on + strand, within Pf6N2E2_713 at 817.243 kb on + strand, within Pf6N2E2_713 at 817.243 kb on + strand, within Pf6N2E2_713 at 817.244 kb on - strand, within Pf6N2E2_713 at 817.244 kb on - strand, within Pf6N2E2_713 at 817.244 kb on - strand, within Pf6N2E2_713 at 817.244 kb on - strand at 817.244 kb on - strand, within Pf6N2E2_713 at 817.244 kb on - strand, within Pf6N2E2_713 at 817.247 kb on + strand, within Pf6N2E2_713 at 817.264 kb on + strand, within Pf6N2E2_713 at 817.266 kb on + strand, within Pf6N2E2_713 at 817.266 kb on + strand, within Pf6N2E2_713 at 817.267 kb on - strand, within Pf6N2E2_713 at 817.267 kb on - strand, within Pf6N2E2_713 at 817.303 kb on + strand, within Pf6N2E2_713 at 817.304 kb on - strand, within Pf6N2E2_713 at 817.429 kb on + strand, within Pf6N2E2_713 at 817.605 kb on + strand at 817.606 kb on - strand at 817.606 kb on - strand at 817.606 kb on - strand at 817.606 kb on - strand at 817.606 kb on - strand at 817.798 kb on + strand at 817.799 kb on - strand at 817.799 kb on - strand at 817.861 kb on + strand at 817.878 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 4 mg/ml remove 815,744 + Pf6N2E2_711 0.48 -0.2 815,745 - Pf6N2E2_711 0.48 +0.7 815,898 - Pf6N2E2_711 0.56 -0.6 816,162 - Pf6N2E2_711 0.70 -0.1 816,267 + Pf6N2E2_711 0.76 +0.0 816,267 + Pf6N2E2_711 0.76 -0.5 816,267 + Pf6N2E2_711 0.76 +0.1 816,268 - Pf6N2E2_711 0.76 +1.6 816,268 - Pf6N2E2_711 0.76 -0.0 816,381 + Pf6N2E2_711 0.82 +0.0 816,381 + Pf6N2E2_711 0.82 -0.8 816,381 + Pf6N2E2_711 0.82 +0.4 816,381 + Pf6N2E2_711 0.82 -0.2 816,382 - Pf6N2E2_711 0.82 +0.7 816,382 - Pf6N2E2_711 0.82 +0.5 816,382 - Pf6N2E2_711 0.82 -0.1 816,382 - Pf6N2E2_711 0.82 -0.1 816,495 + Pf6N2E2_711 0.89 +0.8 816,495 + Pf6N2E2_711 0.89 +1.5 816,495 + Pf6N2E2_711 0.89 -0.2 816,601 - +0.1 816,609 + -0.2 816,609 + +0.9 816,609 + +0.1 816,609 + +1.2 816,609 + +0.3 816,610 - -0.5 816,610 - +0.7 816,610 - -0.5 816,610 - -0.1 816,610 - -1.1 816,610 - +0.2 816,631 - +0.4 816,681 + +0.0 816,682 - +0.3 816,884 + Pf6N2E2_712 0.87 -0.2 816,884 + Pf6N2E2_712 0.87 -0.3 816,885 - Pf6N2E2_712 0.88 -0.9 816,885 - Pf6N2E2_712 0.88 -1.2 817,243 + Pf6N2E2_713 0.49 -1.4 817,243 + Pf6N2E2_713 0.49 -1.8 817,243 + Pf6N2E2_713 0.49 +0.6 817,243 + Pf6N2E2_713 0.49 -0.2 817,243 + Pf6N2E2_713 0.49 +0.2 817,243 + Pf6N2E2_713 0.49 -2.2 817,243 + Pf6N2E2_713 0.49 -1.1 817,244 - Pf6N2E2_713 0.49 +0.4 817,244 - Pf6N2E2_713 0.49 -0.2 817,244 - Pf6N2E2_713 0.49 -0.2 817,244 - -0.2 817,244 - Pf6N2E2_713 0.49 -2.0 817,244 - Pf6N2E2_713 0.49 -0.6 817,247 + Pf6N2E2_713 0.50 -0.2 817,264 + Pf6N2E2_713 0.52 +1.3 817,266 + Pf6N2E2_713 0.53 +2.2 817,266 + Pf6N2E2_713 0.53 -1.8 817,267 - Pf6N2E2_713 0.53 -0.3 817,267 - Pf6N2E2_713 0.53 +2.6 817,303 + Pf6N2E2_713 0.58 -0.2 817,304 - Pf6N2E2_713 0.58 +0.5 817,429 + Pf6N2E2_713 0.76 +0.2 817,605 + +0.1 817,606 - -0.5 817,606 - -1.2 817,606 - +0.8 817,606 - +0.2 817,606 - -0.1 817,798 + +0.5 817,799 - +0.7 817,799 - -0.5 817,861 + +0.1 817,878 + +0.4
Or see this region's nucleotide sequence