Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4976

Experiment: Cephalothin 4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4975 and Pf6N2E2_4976 are separated by 107 nucleotidesPf6N2E2_4976 and Pf6N2E2_4977 are separated by 11 nucleotides Pf6N2E2_4975 - Histone acetyltransferase HPA2 and related acetyltransferases, at 5,740,398 to 5,740,859 _4975 Pf6N2E2_4976 - Ethanolamine ammonia-lyase light chain (EC 4.3.1.7), at 5,740,967 to 5,741,791 _4976 Pf6N2E2_4977 - Ethanolamine ammonia-lyase heavy chain (EC 4.3.1.7), at 5,741,803 to 5,743,197 _4977 Position (kb) 5740 5741 5742Strain fitness (log2 ratio) -2 -1 0 1 2at 5739.975 kb on + strandat 5739.975 kb on + strandat 5739.976 kb on - strandat 5740.083 kb on + strandat 5740.083 kb on + strandat 5740.084 kb on - strandat 5740.150 kb on - strandat 5740.150 kb on - strandat 5740.288 kb on + strandat 5740.426 kb on + strandat 5740.426 kb on + strandat 5740.426 kb on + strandat 5740.426 kb on + strandat 5740.427 kb on - strandat 5740.427 kb on - strandat 5740.427 kb on - strandat 5740.427 kb on - strandat 5740.427 kb on - strandat 5740.468 kb on + strand, within Pf6N2E2_4975at 5740.603 kb on + strand, within Pf6N2E2_4975at 5740.603 kb on + strand, within Pf6N2E2_4975at 5740.603 kb on + strand, within Pf6N2E2_4975at 5740.603 kb on + strand, within Pf6N2E2_4975at 5740.604 kb on - strand, within Pf6N2E2_4975at 5740.604 kb on - strand, within Pf6N2E2_4975at 5740.604 kb on - strand, within Pf6N2E2_4975at 5740.604 kb on - strand, within Pf6N2E2_4975at 5740.604 kb on - strand, within Pf6N2E2_4975at 5740.711 kb on + strand, within Pf6N2E2_4975at 5740.711 kb on + strand, within Pf6N2E2_4975at 5740.712 kb on - strand, within Pf6N2E2_4975at 5740.712 kb on - strand, within Pf6N2E2_4975at 5740.712 kb on - strand, within Pf6N2E2_4975at 5740.712 kb on - strand, within Pf6N2E2_4975at 5740.787 kb on - strand, within Pf6N2E2_4975at 5740.862 kb on + strandat 5740.862 kb on + strandat 5740.862 kb on + strandat 5740.863 kb on - strandat 5740.863 kb on - strandat 5740.863 kb on - strandat 5740.863 kb on - strandat 5740.863 kb on - strandat 5740.890 kb on - strandat 5740.890 kb on - strandat 5740.988 kb on + strandat 5740.989 kb on - strandat 5740.989 kb on - strandat 5741.006 kb on - strandat 5741.014 kb on + strandat 5741.027 kb on + strandat 5741.027 kb on + strandat 5741.028 kb on - strandat 5741.028 kb on - strandat 5741.100 kb on + strand, within Pf6N2E2_4976at 5741.100 kb on + strand, within Pf6N2E2_4976at 5741.101 kb on - strand, within Pf6N2E2_4976at 5741.208 kb on + strand, within Pf6N2E2_4976at 5741.209 kb on - strand, within Pf6N2E2_4976at 5741.209 kb on - strand, within Pf6N2E2_4976at 5741.398 kb on + strand, within Pf6N2E2_4976at 5741.398 kb on + strand, within Pf6N2E2_4976at 5741.398 kb on + strand, within Pf6N2E2_4976at 5741.399 kb on - strand, within Pf6N2E2_4976at 5741.399 kb on - strand, within Pf6N2E2_4976at 5741.399 kb on - strand, within Pf6N2E2_4976at 5741.399 kb on - strand, within Pf6N2E2_4976at 5741.399 kb on - strand, within Pf6N2E2_4976at 5741.479 kb on - strand, within Pf6N2E2_4976at 5741.537 kb on + strand, within Pf6N2E2_4976at 5741.537 kb on + strand, within Pf6N2E2_4976at 5741.538 kb on - strand, within Pf6N2E2_4976at 5741.538 kb on - strand, within Pf6N2E2_4976at 5741.541 kb on + strand, within Pf6N2E2_4976at 5741.541 kb on + strand, within Pf6N2E2_4976at 5741.541 kb on + strand, within Pf6N2E2_4976at 5741.542 kb on - strand, within Pf6N2E2_4976at 5741.542 kb on - strand, within Pf6N2E2_4976at 5741.542 kb on - strand, within Pf6N2E2_4976at 5741.542 kb on - strand, within Pf6N2E2_4976at 5741.542 kb on - strand, within Pf6N2E2_4976at 5741.542 kb on - strand, within Pf6N2E2_4976at 5741.542 kb on - strand, within Pf6N2E2_4976at 5741.804 kb on + strandat 5741.804 kb on + strandat 5741.804 kb on + strandat 5741.805 kb on - strandat 5741.805 kb on - strandat 5741.805 kb on - strandat 5741.951 kb on + strand, within Pf6N2E2_4977at 5741.981 kb on + strand, within Pf6N2E2_4977at 5741.982 kb on - strand, within Pf6N2E2_4977at 5741.982 kb on - strand, within Pf6N2E2_4977at 5742.098 kb on + strand, within Pf6N2E2_4977at 5742.098 kb on + strand, within Pf6N2E2_4977at 5742.099 kb on - strand, within Pf6N2E2_4977at 5742.185 kb on + strand, within Pf6N2E2_4977at 5742.185 kb on + strand, within Pf6N2E2_4977at 5742.185 kb on + strand, within Pf6N2E2_4977at 5742.185 kb on + strand, within Pf6N2E2_4977at 5742.185 kb on + strand, within Pf6N2E2_4977at 5742.186 kb on - strand, within Pf6N2E2_4977at 5742.186 kb on - strand, within Pf6N2E2_4977at 5742.186 kb on - strand, within Pf6N2E2_4977at 5742.211 kb on + strand, within Pf6N2E2_4977at 5742.212 kb on - strand, within Pf6N2E2_4977at 5742.212 kb on - strand, within Pf6N2E2_4977at 5742.257 kb on + strand, within Pf6N2E2_4977at 5742.338 kb on + strand, within Pf6N2E2_4977at 5742.338 kb on + strand, within Pf6N2E2_4977at 5742.338 kb on + strand, within Pf6N2E2_4977at 5742.338 kb on + strand, within Pf6N2E2_4977at 5742.339 kb on - strand, within Pf6N2E2_4977at 5742.339 kb on - strand, within Pf6N2E2_4977at 5742.339 kb on - strand, within Pf6N2E2_4977at 5742.339 kb on - strand, within Pf6N2E2_4977at 5742.339 kb on - strand, within Pf6N2E2_4977

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 4 mg/ml
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5,739,975 + +0.3
5,739,975 + -0.5
5,739,976 - -1.4
5,740,083 + +0.9
5,740,083 + +0.4
5,740,084 - +0.5
5,740,150 - -0.5
5,740,150 - +0.2
5,740,288 + +0.4
5,740,426 + -0.5
5,740,426 + +0.5
5,740,426 + -0.1
5,740,426 + -0.4
5,740,427 - -0.2
5,740,427 - +0.2
5,740,427 - -0.0
5,740,427 - -0.3
5,740,427 - +0.5
5,740,468 + Pf6N2E2_4975 0.15 +0.8
5,740,603 + Pf6N2E2_4975 0.44 +1.1
5,740,603 + Pf6N2E2_4975 0.44 +0.8
5,740,603 + Pf6N2E2_4975 0.44 +1.1
5,740,603 + Pf6N2E2_4975 0.44 -0.0
5,740,604 - Pf6N2E2_4975 0.45 +0.3
5,740,604 - Pf6N2E2_4975 0.45 +1.0
5,740,604 - Pf6N2E2_4975 0.45 -0.3
5,740,604 - Pf6N2E2_4975 0.45 +0.2
5,740,604 - Pf6N2E2_4975 0.45 +0.5
5,740,711 + Pf6N2E2_4975 0.68 +0.4
5,740,711 + Pf6N2E2_4975 0.68 +1.0
5,740,712 - Pf6N2E2_4975 0.68 +0.2
5,740,712 - Pf6N2E2_4975 0.68 +0.4
5,740,712 - Pf6N2E2_4975 0.68 -0.9
5,740,712 - Pf6N2E2_4975 0.68 +1.6
5,740,787 - Pf6N2E2_4975 0.84 -0.5
5,740,862 + +0.0
5,740,862 + +0.3
5,740,862 + +0.3
5,740,863 - -0.2
5,740,863 - -0.0
5,740,863 - +0.5
5,740,863 - +0.4
5,740,863 - +0.2
5,740,890 - -0.5
5,740,890 - +0.5
5,740,988 + +1.1
5,740,989 - -0.4
5,740,989 - -0.0
5,741,006 - -0.4
5,741,014 + +0.4
5,741,027 + +0.5
5,741,027 + +0.0
5,741,028 - -0.4
5,741,028 - -0.7
5,741,100 + Pf6N2E2_4976 0.16 +1.6
5,741,100 + Pf6N2E2_4976 0.16 +0.5
5,741,101 - Pf6N2E2_4976 0.16 +0.5
5,741,208 + Pf6N2E2_4976 0.29 -0.1
5,741,209 - Pf6N2E2_4976 0.29 +0.9
5,741,209 - Pf6N2E2_4976 0.29 +0.8
5,741,398 + Pf6N2E2_4976 0.52 +0.3
5,741,398 + Pf6N2E2_4976 0.52 -2.4
5,741,398 + Pf6N2E2_4976 0.52 -0.7
5,741,399 - Pf6N2E2_4976 0.52 -0.5
5,741,399 - Pf6N2E2_4976 0.52 +0.6
5,741,399 - Pf6N2E2_4976 0.52 -0.3
5,741,399 - Pf6N2E2_4976 0.52 +0.2
5,741,399 - Pf6N2E2_4976 0.52 +0.6
5,741,479 - Pf6N2E2_4976 0.62 +0.4
5,741,537 + Pf6N2E2_4976 0.69 +0.4
5,741,537 + Pf6N2E2_4976 0.69 +1.1
5,741,538 - Pf6N2E2_4976 0.69 +0.0
5,741,538 - Pf6N2E2_4976 0.69 -1.6
5,741,541 + Pf6N2E2_4976 0.70 -0.6
5,741,541 + Pf6N2E2_4976 0.70 -0.5
5,741,541 + Pf6N2E2_4976 0.70 +0.3
5,741,542 - Pf6N2E2_4976 0.70 -0.4
5,741,542 - Pf6N2E2_4976 0.70 +0.4
5,741,542 - Pf6N2E2_4976 0.70 +0.5
5,741,542 - Pf6N2E2_4976 0.70 +0.3
5,741,542 - Pf6N2E2_4976 0.70 +0.8
5,741,542 - Pf6N2E2_4976 0.70 -0.1
5,741,542 - Pf6N2E2_4976 0.70 -0.1
5,741,804 + -0.1
5,741,804 + +1.1
5,741,804 + -0.5
5,741,805 - +0.3
5,741,805 - +0.3
5,741,805 - -0.1
5,741,951 + Pf6N2E2_4977 0.11 +1.9
5,741,981 + Pf6N2E2_4977 0.13 -0.2
5,741,982 - Pf6N2E2_4977 0.13 -0.8
5,741,982 - Pf6N2E2_4977 0.13 -0.1
5,742,098 + Pf6N2E2_4977 0.21 -1.4
5,742,098 + Pf6N2E2_4977 0.21 +0.3
5,742,099 - Pf6N2E2_4977 0.21 -0.3
5,742,185 + Pf6N2E2_4977 0.27 -0.3
5,742,185 + Pf6N2E2_4977 0.27 +0.2
5,742,185 + Pf6N2E2_4977 0.27 +0.2
5,742,185 + Pf6N2E2_4977 0.27 +0.4
5,742,185 + Pf6N2E2_4977 0.27 +1.2
5,742,186 - Pf6N2E2_4977 0.27 +0.4
5,742,186 - Pf6N2E2_4977 0.27 +0.4
5,742,186 - Pf6N2E2_4977 0.27 -0.4
5,742,211 + Pf6N2E2_4977 0.29 +2.1
5,742,212 - Pf6N2E2_4977 0.29 +1.7
5,742,212 - Pf6N2E2_4977 0.29 -0.7
5,742,257 + Pf6N2E2_4977 0.33 -0.4
5,742,338 + Pf6N2E2_4977 0.38 +2.7
5,742,338 + Pf6N2E2_4977 0.38 +1.5
5,742,338 + Pf6N2E2_4977 0.38 +0.2
5,742,338 + Pf6N2E2_4977 0.38 -0.3
5,742,339 - Pf6N2E2_4977 0.38 +0.2
5,742,339 - Pf6N2E2_4977 0.38 +1.0
5,742,339 - Pf6N2E2_4977 0.38 -0.2
5,742,339 - Pf6N2E2_4977 0.38 +0.7
5,742,339 - Pf6N2E2_4977 0.38 -0.3

Or see this region's nucleotide sequence